PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

CCG026441.1

Organism

Populus euphratica

Taxonomic ID

75702

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus

Family

G2-like

Protein Properties

Length: 438aa MW: 48701.1 Da PI: 5.8976

Description

G2-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
CCG026441.1	genome	LZU	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	G2-like	106.9	1.1e-33	202	256	1	55
G2-like 1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 k r+rWtpeLHe+Fveav+qLGGse+AtPk +l+ m+v+gLt++hvkSHLQkYR+ CCG026441.1 202 KSRMRWTPELHEAFVEAVNQLGGSERATPKGVLKQMNVEGLTIYHVKSHLQKYRT 256 68****************************************************8 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51294	12.489	199	259	IPR017930	Myb domain
SuperFamily	SSF46689	4.84E-18	200	256	IPR009057	Homeodomain-like
Gene3D	G3DSA:1.10.10.60	6.1E-31	201	258	IPR009057	Homeodomain-like
TIGRFAMs	TIGR01557	1.5E-24	202	256	IPR006447	Myb domain, plants
Pfam	PF00249	1.8E-10	204	255	IPR001005	SANT/Myb domain
Pfam	PF14379	5.6E-22	287	334	IPR025756	MYB-CC type transcription factor, LHEQLE-containing domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 438 aa Download sequence Send to blast
MIRNPASQQA SPLSSGNGSV GHLVSSSSRF TNDMSVSAVS PQGKQSHNSP FISQSLRDGG 60 NFPPTHYSHS EGLSTAFINH SDDNKDLSWA IDPLQDFLNF VENVPVQNGQ VESTAGVIAS 120 EDHAKRTDWQ EWADQLISVD DELEPNWSEI LNDVNMKDSK QKMSRPSPNN SVQQPLIHQH 180 QTPHSGEVCA VTNPLLVAPP TKSRMRWTPE LHEAFVEAVN QLGGSERATP KGVLKQMNVE 240 GLTIYHVKSH LQKYRTARYK PESSEGTSEK KLSPVEEMKS LDLKTSMGIS EALRLQMEVQ 300 KQLHEQLEIQ RNLQLRIEEQ GRHLQEMFEK QKKMEGDKSK APPPSQNDPS LLQSKLEQSP 360 ANDKLEASDL DCVKTRFDTS NASALLEESS QSISRKQKAP EDRNCQVVDT NGEKTSLALV 420 KRPRTDETTA LTAEPASN

Sequence ? help Back to Top

Protein Sequence Length: 438 aa Download sequence Send to blast

MIRNPASQQA SPLSSGNGSV GHLVSSSSRF TNDMSVSAVS PQGKQSHNSP FISQSLRDGG  60
NFPPTHYSHS EGLSTAFINH SDDNKDLSWA IDPLQDFLNF VENVPVQNGQ VESTAGVIAS  120
EDHAKRTDWQ EWADQLISVD DELEPNWSEI LNDVNMKDSK QKMSRPSPNN SVQQPLIHQH  180
QTPHSGEVCA VTNPLLVAPP TKSRMRWTPE LHEAFVEAVN QLGGSERATP KGVLKQMNVE  240
GLTIYHVKSH LQKYRTARYK PESSEGTSEK KLSPVEEMKS LDLKTSMGIS EALRLQMEVQ  300
KQLHEQLEIQ RNLQLRIEEQ GRHLQEMFEK QKKMEGDKSK APPPSQNDPS LLQSKLEQSP  360
ANDKLEASDL DCVKTRFDTS NASALLEESS QSISRKQKAP EDRNCQVVDT NGEKTSLALV  420
KRPRTDETTA LTAEPASN

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
6j4k_A	5e-31	202	260	2	60	Protein PHOSPHATE STARVATION RESPONSE 1
6j4k_B	5e-31	202	260	2	60	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_A	5e-31	202	260	2	60	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_C	5e-31	202	260	2	60	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_D	5e-31	202	260	2	60	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_F	5e-31	202	260	2	60	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_H	5e-31	202	260	2	60	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_J	5e-31	202	260	2	60	Protein PHOSPHATE STARVATION RESPONSE 1
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor acting as central integrator of phosphate starvation responses (PubMed:20838596). Regulates FER1 expression upon phosphate starvation, linking iron and phosphate homeostasis (PubMed:23788639). {ECO:0000269\|PubMed:20838596, ECO:0000269\|PubMed:23788639}.

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Not up-regulated by Pi starvation. {ECO:0000269\|PubMed:26586833}.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_011036348.1	0.0	PREDICTED: protein PHR1-LIKE 1-like isoform X4
Refseq	XP_011036349.1	0.0	PREDICTED: protein PHR1-LIKE 1-like isoform X4
Swissprot	Q8GUN5	1e-96	PHL1_ARATH; Protein PHR1-LIKE 1
TrEMBL	A0A2K1WN81	0.0	A0A2K1WN81_POPTR; Uncharacterized protein
STRING	POPTR_0019s03750.1	0.0	(Populus trichocarpa)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF1512	34	98

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G29000.3	3e-99	G2-like family protein

Publications ? help Back to Top
Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546] Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444] Bonnot C, et al. A chemical genetic strategy identify the PHOSTIN, a synthetic molecule that triggers phosphate starvation responses in Arabidopsis thaliana. New Phytol., 2016. 209(1): p. 161-76 [PMID:26243630] Aleksza D,Horváth GV,Sándor G,Szabados L Proline Accumulation Is Regulated by Transcription Factors Associated with Phosphate Starvation. Plant Physiol., 2017. 175(1): p. 555-567 [PMID:28765275]