PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | CCG026343.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
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Family | B3 | ||||||||
Protein Properties | Length: 133aa MW: 15467 Da PI: 7.7725 | ||||||||
Description | B3 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | B3 | 32.9 | 1.1e-10 | 8 | 97 | 1 | 88 |
EEEE-..-HHHHTT-EE--HHH.HTT...---..--SEEEEEETTS-EEEEEE.....EEETTE...EEE-TTHHHHHHHHT--TT-EEEEEE-SSS CS B3 1 ffkvltpsdvlksgrlvlpkkfaeeh...ggkkeesktltledesgrsWevkliy...rkksgr...yvltkGWkeFvkangLkegDfvvFkldgrs 88 f k+l+p ++ +++ l++p + +e++ +g + d + + W++ l+ ++l++ W +Fv+++gL D vvF +++++ CCG026343.1 8 FTKKLKP-SHISHA-LSIPTHVLEAFpipEGA--HMMNFEAVDVTDNAWRFCLSTrmtGA---YpkpVLLRSSWHRFVEQKGLAPEDRVVFFMERDE 97 7788844.444555.********999554333..334455567889*******7633333...3556********************9999876654 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:2.40.330.10 | 4.5E-14 | 6 | 98 | IPR015300 | DNA-binding pseudobarrel domain |
SuperFamily | SSF101936 | 8.24E-12 | 7 | 102 | IPR015300 | DNA-binding pseudobarrel domain |
CDD | cd10017 | 1.80E-10 | 7 | 97 | No hit | No description |
Pfam | PF02362 | 2.9E-8 | 8 | 97 | IPR003340 | B3 DNA binding domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 133 aa Download sequence Send to blast |
MEPVQVLFTK KLKPSHISHA LSIPTHVLEA FPIPEGAHMM NFEAVDVTDN AWRFCLSTRM 60 TGAYPKPVLL RSSWHRFVEQ KGLAPEDRVV FFMERDEAND MIRRYTVRAQ RKVMTLMAQD 120 VWVDVEHLPL YGL |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AC216593 | 0.0 | AC216593.1 Populus trichocarpa clone POP016-L16, complete sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_011007873.1 | 1e-82 | PREDICTED: uncharacterized protein LOC105113408 | ||||
TrEMBL | A0A3N7H3I5 | 8e-89 | A0A3N7H3I5_POPTR; Uncharacterized protein | ||||
STRING | cassava4.1_027512m | 2e-48 | (Manihot esculenta) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF13907 | 2 | 9 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G25730.1 | 9e-08 | ethylene response DNA binding factor 3 |