PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

CCG026219.1

Organism

Populus euphratica

Taxonomic ID

75702

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus

Family

NAC

Protein Properties

Length: 306aa MW: 35505.1 Da PI: 7.3592

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
CCG026219.1	genome	LZU	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	162.6	1.5e-50	24	150	2	128
NAM 2 ppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlsk..kg 97 pGfrFhPtdeelv +yL++kve+k++ + e ik++diyk++PwdLp +ae+kewyfF+ r +ky+++ r+nr+t+sg+Wkatg dk+++s ++ CCG026219.1 24 LPGFRFHPTDEELVGFYLRRKVEKKRIGI-ELIKQIDIYKYDPWDLPI-STAEDKEWYFFCLRGRKYRNSVRPNRVTRSGFWKATGIDKPIYSDkeTH 119 69************************9.89***********4.456899**********************************75445 PP NAM 98 elvglkktLvfykgrapkgektdWvmheyrl 128 e +glkk Lv+y+g+a kg+ktdW+mhe+rl CCG026219.1 120 ECIGLKKCLVYYRGSAGKGTKTDWMMHEFRL 150 55*************************98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF101941	4.58E-52	19	179	IPR003441	NAC domain
PROSITE profile	PS51005	52.041	23	180	IPR003441	NAC domain
Pfam	PF02365	8.4E-26	25	150	IPR003441	NAC domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 306 aa Download sequence Send to blast
MEAVTKMSGC ISSDNYDKDE EVILPGFRFH PTDEELVGFY LRRKVEKKRI GIELIKQIDI 60 YKYDPWDLPI STAEDKEWYF FCLRGRKYRN SVRPNRVTRS GFWKATGIDK PIYSDKETHE 120 CIGLKKCLVY YRGSAGKGTK TDWMMHEFRL PPNGKTTNPL NARNIAQEAE IWTLCRILKR 180 IPTYKKFVAA VIPATEQKPI NCDSNSKTCS FESETSTEQD VSFGYSFVQR NERKPVTRDQ 240 VDHERNHLFM GGQYDSVTEA PFTAAYQGFR NTGIGDDFFV NGNWDDLRTV VDLAIDPAQV 300 YDECRW

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1ut4_A	7e-44	25	186	19	171	NO APICAL MERISTEM PROTEIN
1ut4_B	7e-44	25	186	19	171	NO APICAL MERISTEM PROTEIN
1ut7_A	7e-44	25	186	19	171	NO APICAL MERISTEM PROTEIN
1ut7_B	7e-44	25	186	19	171	NO APICAL MERISTEM PROTEIN
3swm_A	9e-44	25	186	22	174	NAC domain-containing protein 19
3swm_B	9e-44	25	186	22	174	NAC domain-containing protein 19
3swm_C	9e-44	25	186	22	174	NAC domain-containing protein 19
3swm_D	9e-44	25	186	22	174	NAC domain-containing protein 19
3swp_A	9e-44	25	186	22	174	NAC domain-containing protein 19
3swp_B	9e-44	25	186	22	174	NAC domain-containing protein 19
3swp_C	9e-44	25	186	22	174	NAC domain-containing protein 19
3swp_D	9e-44	25	186	22	174	NAC domain-containing protein 19
4dul_A	7e-44	25	186	19	171	NAC domain-containing protein 19
4dul_B	7e-44	25	186	19	171	NAC domain-containing protein 19
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Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor that binds to the 5'- RRYGCCGT-3' consensus core sequence. Central longevity regulator. Negative regulator of leaf senescence. Modulates cellular H(2)O(2) levels and enhances tolerance to various abiotic stresses through the regulation of DREB2A. {ECO:0000269\|PubMed:22345491}.

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Up-regulated by H(2)O(2), paraquat, ozone, 3-aminotriazole and salt stress. {ECO:0000269\|PubMed:22345491}.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_011016675.1	0.0	PREDICTED: transcription factor JUNGBRUNNEN 1-like isoform X1
Swissprot	Q9SK55	6e-90	NAC42_ARATH; Transcription factor JUNGBRUNNEN 1
TrEMBL	B9H845	0.0	B9H845_POPTR; Uncharacterized protein
STRING	POPTR_0005s22710.1	0.0	(Populus trichocarpa)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF1013	34	112

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G43000.1	3e-92	NAC domain containing protein 42

Publications ? help Back to Top
Shahnejat-Bushehri S,Nobmann B,Devi Allu A,Balazadeh S JUB1 suppresses Pseudomonas syringae-induced defense responses through accumulation of DELLA proteins. Plant Signal Behav, 2016. 11(6): p. e1181245 [PMID:27159137] Shahnejat-Bushehri S,Tarkowska D,Sakuraba Y,Balazadeh S Arabidopsis NAC transcription factor JUB1 regulates GA/BR metabolism and signalling. Nat Plants, 2016. 2: p. 16013 [PMID:27249348] Shahnejat-Bushehri S, et al. Arabidopsis NAC Transcription Factor JUNGBRUNNEN1 Exerts Conserved Control Over Gibberellin and Brassinosteroid Metabolism and Signaling Genes in Tomato. Front Plant Sci, 2017. 8: p. 214 [PMID:28326087] Sakuraba Y,Bülbül S,Piao W,Choi G,Paek NC Arabidopsis EARLY FLOWERING3 increases salt tolerance by suppressing salt stress response pathways. Plant J., 2017. 92(6): p. 1106-1120 [PMID:29032592] Ebrahimian-Motlagh S, et al. JUNGBRUNNEN1 Confers Drought Tolerance Downstream of the HD-Zip I Transcription Factor AtHB13. Front Plant Sci, 2017. 8: p. 2118 [PMID:29326734]