PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID CCG026047.1
Organism
Populus euphratica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
Family ERF
Protein Properties Length: 463aa    MW: 51401.6 Da    PI: 6.1929
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
CCG026047.1genomeLZUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP257.43.6e-18229279256
          AP2   2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkklege 56 
                   y+GVr+++ +g+WvAeIr p++   r+r +lg+f+ ae+Aa a+++ + kl+ge
  CCG026047.1 229 LYRGVRQRH-WGKWVAEIRLPRN---RTRLWLGTFDNAEDAALAYDREAFKLRGE 279
                  59******9.**********955...5**************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000183.47E-32228288No hitNo description
PROSITE profilePS5103222.471229286IPR001471AP2/ERF domain
SMARTSM003807.0E-39229292IPR001471AP2/ERF domain
SuperFamilySSF541713.86E-22229287IPR016177DNA-binding domain
Gene3DG3DSA:3.30.730.103.2E-31229287IPR001471AP2/ERF domain
PRINTSPR003676.2E-10230241IPR001471AP2/ERF domain
PfamPF008473.1E-11230279IPR001471AP2/ERF domain
PRINTSPR003676.2E-10252268IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009651Biological Processresponse to salt stress
GO:2000070Biological Processregulation of response to water deprivation
GO:0005634Cellular Componentnucleus
GO:0005737Cellular Componentcytoplasm
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 463 aa     Download sequence    Send to blast
MDSAKNNTGK SKKGVVDETQ RLAMDQDWQL DRGRKEADIS FERRQWKPVF GEASLSDRPS  60
KKIRSPERQE QTQSSAYLAH QLPPSFSVSS SSASTLSLYP PSLSSSPVSS SSSRPQFPFS  120
FEGSNQPVQF HQQVGTNPSS TIFHPPSQVA QNQQQMISFG HDQQHGIAYP PFFAGESALA  180
NHHQQQLFQY WNDALNLSPR GRMMMMNRLG PNGRPLFRPP IQPINTTKLY RGVRQRHWGK  240
WVAEIRLPRN RTRLWLGTFD NAEDAALAYD REAFKLRGEN ARLNFPELFL NKDKETSTAP  300
SSSVSSAPTP NQISMPKQAQ EGLNLEVETM PPPPPPPQQP QGDHPDDDSG LGSSGATVSD  360
EVQAVGSSGG EGTSGSQELM WGDMAEAWYN AIQAGWGPGS PVWDDMDTTN NFLLQSHLPF  420
VTPNQQQFSD SSDLQRQQDN MGSASSSSSS SFPTKPFFWK DQD
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gcc_A5e-20228286160ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1
Search in ModeBase
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankEF1559420.0EF155942.1 Populus trichocarpa RAP2-like protein (RAP2L1) gene, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011039744.10.0PREDICTED: ethylene-responsive transcription factor ERF054-like
TrEMBLA0A2K1WSA90.0A0A2K1WSA9_POPTR; Uncharacterized protein
STRINGPOPTR_0019s13330.10.0(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF42683258
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G20880.13e-59ERF family protein