PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

CCG025907.1

Organism

Populus euphratica

Taxonomic ID

75702

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus

Family

CPP

Protein Properties

Length: 909aa MW: 99154.2 Da PI: 5.9252

Description

CPP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
CCG025907.1	genome	LZU	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	TCR	46.7	6.3e-15	486	524	3	41
TCR 3 kkgCnCkkskClkkYCeCfaagkkCseeCkCedCkNkee 41 +k+CnC+k+kClk+YC+Cfaag +C+ C C++C+N+ e CCG025907.1 486 CKRCNCRKTKCLKLYCDCFAAGIYCAAICACQGCFNRPE 524 79**********************************876 PP
2	TCR	47.8	2.8e-15	572	610	1	39
TCR 1 kekkgCnCkkskClkkYCeCfaagkkCseeCkCedCkNk 39 ++k gCnCk+s C+kkYCeC++a++ Cs+ C+Ce+C+N CCG025907.1 572 RHKTGCNCKRSMCVKKYCECYQANVGCSNACRCEGCRNI 610 5899**********************************6 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM01114	5.5E-15	484	525	IPR033467	Tesmin/TSO1-like CXC domain
PROSITE profile	PS51634	32.925	485	612	IPR005172	CRC domain
Pfam	PF03638	3.9E-11	487	522	IPR005172	CRC domain
SMART	SM01114	1.5E-15	572	613	IPR033467	Tesmin/TSO1-like CXC domain
Pfam	PF03638	1.1E-10	575	609	IPR005172	CRC domain

Sequence ? help Back to Top
Protein Sequence Length: 909 aa Download sequence Send to blast
MDSPKTTTTT TTTTIPATAT TVSLSDSPPV QESPFSNYIS NLSPIKPVNT AHVAHGLLGI 60 NSPPLVFKSP HTASDRQINL LRRFQYPQIS GAETSKINDG SKKSVDGPED MGRSSICLTS 120 SLIVDAQTSD NVNNSEQDQP GSSSGCVDEY LSDPVDADCA DSVNLVNPNV KKSDDALQSS 180 ESNLTNYKIV ESDDINDKGT KGEVSQARPE QDGDDPKEQP TSENKMEKIK EEGSLTKQPS 240 HVCPNFGSDL LVDHASRQQC YTSGAQVAHP HEPIQLVTYN GSEASQLQRG MSRRCLQFEQ 300 AQQETTKDGT YSPNPAINLF GSISPASSTE LEILDSSQVE LTISSLKEQT MTAMFSANIS 360 GKSPVAVSKP SGIGLHLNSI VNTLPMGSGA SGPIMSHHLV ENKISCSKLS NLVERVSLTA 420 GDRVLQTKAS LATSSTTSES FHNMESFNNL QPPEHQVTPH NKRRFSSEHA GNFEEKKASS 480 TDGDGCKRCN CRKTKCLKLY CDCFAAGIYC AAICACQGCF NRPEYEDTVL ETRQQIESRN 540 PLAFAPRIVQ HVTEFQAIDV EDVDLFTPYS GRHKTGCNCK RSMCVKKYCE CYQANVGCSN 600 ACRCEGCRNI HGRKEEYAMT PEIVSNRANE ESLEGMADEK LEMVANNKFL HAELYDLRSL 660 TPPTPSFEYF SHERDALKSQ LLPGRYVLSS ESDFSMLPSY AKSVSSPSNS HGNDMLPKTS 720 KTLDIVSHGQ ELDYNITEIT GQFSPQCDEL ADFSDHTPLP NPSSIMMASS ASSKTQDKAN 780 VSQPQVYPGS ARLSSGSSLR WHSSPITPMT RLGETKNQSQ DSDCGLYDIL EDDTPEMLKD 840 SSAPITSVKT SSPNKKRVSP PHSHIREFQS SSSAGLKSGR GRKFILKSVP SFPPLTPCRD 900 SKDCTQQKY

Sequence ? help Back to Top

Protein Sequence Length: 909 aa Download sequence Send to blast

MDSPKTTTTT TTTTIPATAT TVSLSDSPPV QESPFSNYIS NLSPIKPVNT AHVAHGLLGI  60
NSPPLVFKSP HTASDRQINL LRRFQYPQIS GAETSKINDG SKKSVDGPED MGRSSICLTS  120
SLIVDAQTSD NVNNSEQDQP GSSSGCVDEY LSDPVDADCA DSVNLVNPNV KKSDDALQSS  180
ESNLTNYKIV ESDDINDKGT KGEVSQARPE QDGDDPKEQP TSENKMEKIK EEGSLTKQPS  240
HVCPNFGSDL LVDHASRQQC YTSGAQVAHP HEPIQLVTYN GSEASQLQRG MSRRCLQFEQ  300
AQQETTKDGT YSPNPAINLF GSISPASSTE LEILDSSQVE LTISSLKEQT MTAMFSANIS  360
GKSPVAVSKP SGIGLHLNSI VNTLPMGSGA SGPIMSHHLV ENKISCSKLS NLVERVSLTA  420
GDRVLQTKAS LATSSTTSES FHNMESFNNL QPPEHQVTPH NKRRFSSEHA GNFEEKKASS  480
TDGDGCKRCN CRKTKCLKLY CDCFAAGIYC AAICACQGCF NRPEYEDTVL ETRQQIESRN  540
PLAFAPRIVQ HVTEFQAIDV EDVDLFTPYS GRHKTGCNCK RSMCVKKYCE CYQANVGCSN  600
ACRCEGCRNI HGRKEEYAMT PEIVSNRANE ESLEGMADEK LEMVANNKFL HAELYDLRSL  660
TPPTPSFEYF SHERDALKSQ LLPGRYVLSS ESDFSMLPSY AKSVSSPSNS HGNDMLPKTS  720
KTLDIVSHGQ ELDYNITEIT GQFSPQCDEL ADFSDHTPLP NPSSIMMASS ASSKTQDKAN  780
VSQPQVYPGS ARLSSGSSLR WHSSPITPMT RLGETKNQSQ DSDCGLYDIL EDDTPEMLKD  840
SSAPITSVKT SSPNKKRVSP PHSHIREFQS SSSAGLKSGR GRKFILKSVP SFPPLTPCRD  900
SKDCTQQKY

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5fd3_A	4e-16	489	610	14	121	Protein lin-54 homolog
5fd3_B	4e-16	489	610	14	121	Protein lin-54 homolog
Search in ModeBase

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_011039719.1	0.0	PREDICTED: CRC domain-containing protein TSO1-like isoform X1
TrEMBL	A0A3N7F4V8	0.0	A0A3N7F4V8_POPTR; Uncharacterized protein
STRING	POPTR_0006s26740.1	0.0	(Populus trichocarpa)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF8565	28	41

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G22780.1	2e-44	Tesmin/TSO1-like CXC domain-containing protein