PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

CCG025614.1

Organism

Populus euphratica

Taxonomic ID

75702

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus

Family

CPP

Protein Properties

Length: 900aa MW: 98813.3 Da PI: 6.4766

Description

CPP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
CCG025614.1	genome	LZU	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	TCR	46.7	6.3e-15	480	518	3	41
TCR 3 kkgCnCkkskClkkYCeCfaagkkCseeCkCedCkNkee 41 +k+CnCkk++Clk+YC+Cfaag +C+e+C C++C N+ e CCG025614.1 480 CKRCNCKKTRCLKRYCDCFAAGIYCAETCACHGCLNRPE 518 79**********************************876 PP
2	TCR	48	2.5e-15	566	604	1	39
TCR 1 kekkgCnCkkskClkkYCeCfaagkkCseeCkCedCkNk 39 ++k gCnCk+s C+kkYCeC++a++ Cs+ C+Ce+CkN CCG025614.1 566 RHKTGCNCKRSMCVKKYCECYQANVGCSNACRCEGCKNI 604 5899**********************************6 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM01114	4.7E-13	478	519	IPR033467	Tesmin/TSO1-like CXC domain
PROSITE profile	PS51634	32.875	479	606	IPR005172	CRC domain
Pfam	PF03638	9.3E-11	481	516	IPR005172	CRC domain
SMART	SM01114	2.8E-15	566	607	IPR033467	Tesmin/TSO1-like CXC domain
Pfam	PF03638	7.9E-11	569	603	IPR005172	CRC domain

Sequence ? help Back to Top
Protein Sequence Length: 900 aa Download sequence Send to blast
MDSPKTTTAT TTISATTAVS LSDSPPVQES PFSNYISRLS PIKPVKDSHV AQGLLGINSP 60 PLVFTSPRML SDRQTNFLRR FQCPQISGAE ISKNDGGSKK SADGPEDLRK SSTYLNSRLI 120 VDVQKSNNIN NNSEQDQPGS FSGCVDEYLS DPVDVDCADS VNLVSQIVKR SDDAHQSSES 180 NLTNSKIAIL ESDGIIDTET KGEASQAMPE QDGEDPKEQS TTETKKEKIE EEGNIVEQPS 240 HVCPNFVSDL LVDHASRQQQ CDTLGAQAAP PHEDYGEDGV TVLHGPVQLI THHGSEVSQL 300 QRGMSRRCLQ FEEAQQKTPM DGTYSLDSAI TIIGSISSSS NTELEILDSS QVELPSSSSK 360 KQTMFVSKPS GFGLHLNSIV NTLPIGCSAS EPIMSHHSAG YRISCSKLPN LVERVSSTAE 420 DEVLSLATGS AISESLRPKE TLNKLQPPEH QVTPHNKRRF SSEHADNFEK KVSSTDGDGC 480 KRCNCKKTRC LKRYCDCFAA GIYCAETCAC HGCLNRPEYE DTVLEARQQK ESHNPLAFAP 540 KIVQHVTEFH AINVEDAGLF TPSSGRHKTG CNCKRSMCVK KYCECYQANV GCSNACRCEG 600 CKNIHGRKEE YGMTEEIVSN RANEERVESM ADNKFKMIAN NKFLHAELYD LRSLTPPTPS 660 FEYSSHGKEA AKSRLLPGRY VLSSEPDFSM LPSYAKSTSS PSNLHANDKL RKTSKALDVV 720 SHGQELDYNI TETMGQFSPL FDELADFSDH TPLPNPYPIM MASSSSKTRD TAINSQLRLY 780 HGNGRLSSAG SLQWRSSPIT PITRLVETKT QALDSGCGLY DILKDDTPEI FKESPTPLTS 840 VKASSPHKKR VSPPRDHIHE FQSSSSASLK SGRKFVLKSV PSFPPLTPCI DPKDRTQQKY

Sequence ? help Back to Top

Protein Sequence Length: 900 aa Download sequence Send to blast

MDSPKTTTAT TTISATTAVS LSDSPPVQES PFSNYISRLS PIKPVKDSHV AQGLLGINSP  60
PLVFTSPRML SDRQTNFLRR FQCPQISGAE ISKNDGGSKK SADGPEDLRK SSTYLNSRLI  120
VDVQKSNNIN NNSEQDQPGS FSGCVDEYLS DPVDVDCADS VNLVSQIVKR SDDAHQSSES  180
NLTNSKIAIL ESDGIIDTET KGEASQAMPE QDGEDPKEQS TTETKKEKIE EEGNIVEQPS  240
HVCPNFVSDL LVDHASRQQQ CDTLGAQAAP PHEDYGEDGV TVLHGPVQLI THHGSEVSQL  300
QRGMSRRCLQ FEEAQQKTPM DGTYSLDSAI TIIGSISSSS NTELEILDSS QVELPSSSSK  360
KQTMFVSKPS GFGLHLNSIV NTLPIGCSAS EPIMSHHSAG YRISCSKLPN LVERVSSTAE  420
DEVLSLATGS AISESLRPKE TLNKLQPPEH QVTPHNKRRF SSEHADNFEK KVSSTDGDGC  480
KRCNCKKTRC LKRYCDCFAA GIYCAETCAC HGCLNRPEYE DTVLEARQQK ESHNPLAFAP  540
KIVQHVTEFH AINVEDAGLF TPSSGRHKTG CNCKRSMCVK KYCECYQANV GCSNACRCEG  600
CKNIHGRKEE YGMTEEIVSN RANEERVESM ADNKFKMIAN NKFLHAELYD LRSLTPPTPS  660
FEYSSHGKEA AKSRLLPGRY VLSSEPDFSM LPSYAKSTSS PSNLHANDKL RKTSKALDVV  720
SHGQELDYNI TETMGQFSPL FDELADFSDH TPLPNPYPIM MASSSSKTRD TAINSQLRLY  780
HGNGRLSSAG SLQWRSSPIT PITRLVETKT QALDSGCGLY DILKDDTPEI FKESPTPLTS  840
VKASSPHKKR VSPPRDHIHE FQSSSSASLK SGRKFVLKSV PSFPPLTPCI DPKDRTQQKY

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5fd3_A	1e-16	481	604	12	121	Protein lin-54 homolog
5fd3_B	1e-16	481	604	12	121	Protein lin-54 homolog
Search in ModeBase

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_011026466.1	0.0	PREDICTED: protein tesmin/TSO1-like CXC 2 isoform X2
TrEMBL	A0A3N7F4V8	0.0	A0A3N7F4V8_POPTR; Uncharacterized protein
STRING	POPTR_0006s26740.1	0.0	(Populus trichocarpa)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF8565	28	41

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G22780.1	7e-54	Tesmin/TSO1-like CXC domain-containing protein