PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID CCG025428.1
Organism
Populus euphratica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
Family ZF-HD
Protein Properties Length: 328aa    MW: 35942.9 Da    PI: 9.6241
Description ZF-HD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
CCG025428.1genomeLZUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1ZF-HD_dimer99.23e-3161117358
  ZF-HD_dimer   3 kvrYkeClkNhAaslGghavDGCgEfmpsegee.gtaaalkCaACgCHRnFHRreve 58 
                   v YkeC kNhAa +Gg a+DGCgEfmp+++++  +aa++kCaACgCHRnFHRre++
  CCG025428.1  61 VVSYKECHKNHAAGIGGLALDGCGEFMPKSTATpQDAASFKCAACGCHRNFHRREPS 117
                  689**************************9999999******************986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF047702.3E-2662116IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
ProDomPD1257743.0E-1962117IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
PROSITE profilePS5152325.62664115IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
TIGRFAMsTIGR015663.2E-2864115IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
SuperFamilySSF466898.61E-15188261IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.604.6E-25189261IPR009057Homeodomain-like
TIGRFAMsTIGR015657.9E-25199256IPR006455Homeodomain, ZF-HD class
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 328 aa     Download sequence    Send to blast
MTKKAMDSTT SPHHITKSPD SDMDTETPLQ THLTKALSLT NGSHKTHQNR HLPPPPQQNM  60
VVSYKECHKN HAAGIGGLAL DGCGEFMPKS TATPQDAASF KCAACGCHRN FHRREPSGPT  120
TIAHMLPPPA LNWTTSSSQS PGSTSSGPSP SPTSPASPSP QSFYPSAPHM LLSLSSGHLD  180
DTQLQKQSYS LAMTSPHGKK RARTKFSQEQ RKKMYLFAEK LGWRLLRGNN DRGVEEFCSE  240
IGVTRNVFKV WMHNNRSRKD KLNNSYGINS SDSCGFNVNE EAGRVGADNK GYSFNNNGSN  300
YDSFDRYRIE SKVHVHGSVA PHGSSPSY
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wh7_A7e-172002571874ZF-HD homeobox family protein
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1198212KKRARTKFSQEQRKK
2200212RARTKFSQEQRKK
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor involved in the up-regulation of several stress-inducible genes. Acts as a transcriptional activator by interacting with MED25 and NAC proteins. Involved in increased drought tolerance. {ECO:0000269|PubMed:16428600, ECO:0000269|PubMed:17233795}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Up-regulated by abscisic acid and by drought and salt stress. Not induced by cold. {ECO:0000269|PubMed:17233795}.
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankEF1485560.0EF148556.1 Populus trichocarpa x Populus deltoides clone WS0134_B05 unknown mRNA.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011013536.10.0PREDICTED: zinc-finger homeodomain protein 11-like
SwissprotQ9SEZ11e-53ZHD11_ARATH; Zinc-finger homeodomain protein 11
TrEMBLB9HY080.0B9HY08_POPTR; ZF-HD family protein
STRINGPOPTR_0010s17650.10.0(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF19793188
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G69600.12e-49zinc finger homeodomain 1
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]