PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | CCG025356.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
|
||||||||
Family | WRKY | ||||||||
Protein Properties | Length: 293aa MW: 32551.9 Da PI: 7.1661 | ||||||||
Description | WRKY family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | WRKY | 102.6 | 2.3e-32 | 154 | 211 | 2 | 59 |
--SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS WRKY 2 dDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 +Dgy+WrKYGqK vk+s+fprsYYrCt ++C+vkk+vers+ed ++v++tYeg+H h+ CCG025356.1 154 EDGYRWRKYGQKAVKNSPFPRSYYRCTNSKCTVKKRVERSSEDSTIVITTYEGQHCHH 211 8******************************************************997 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:2.20.25.80 | 4.4E-33 | 138 | 212 | IPR003657 | WRKY domain |
SuperFamily | SSF118290 | 8.37E-28 | 145 | 211 | IPR003657 | WRKY domain |
PROSITE profile | PS50811 | 29.413 | 148 | 213 | IPR003657 | WRKY domain |
SMART | SM00774 | 2.0E-37 | 153 | 212 | IPR003657 | WRKY domain |
Pfam | PF03106 | 3.7E-25 | 154 | 211 | IPR003657 | WRKY domain |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0009414 | Biological Process | response to water deprivation | ||||
GO:0009651 | Biological Process | response to salt stress | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding | ||||
GO:0044212 | Molecular Function | transcription regulatory region DNA binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 293 aa Download sequence Send to blast |
MDDRDNLDPG TEFTSESSWT FGHDSDGVNY FFSNDRENSI LSEFGWNLQS DEPSRFKDLD 60 RVEAEERSDS AGNLEIQRSS AAGPARSGGR GSRDGSTTNY PSVSSSSSED PPEKSTDSGG 120 KPPEIPSTVK KKGQKRIRQP RFAFMTKSEV DHLEDGYRWR KYGQKAVKNS PFPRSYYRCT 180 NSKCTVKKRV ERSSEDSTIV ITTYEGQHCH HTVGFPRGGI ICHQATFSSH MTPPMSQFIY 240 PGMQLPRENP PSTVLQSRPL PVEARECSTV SSTPTPKLAT DGLLGDIVPP GMR |
3D Structure ? help Back to Top | ||||||
---|---|---|---|---|---|---|
PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1wj2_A | 2e-24 | 143 | 210 | 7 | 74 | Probable WRKY transcription factor 4 |
2ayd_A | 2e-24 | 141 | 210 | 2 | 71 | WRKY transcription factor 1 |
2lex_A | 2e-24 | 143 | 210 | 7 | 74 | Probable WRKY transcription factor 4 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
UniProt | Transcription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element (By similarity). {ECO:0000250}. |
Binding Motif ? help Back to Top | |||
---|---|---|---|
Motif ID | Method | Source | Motif file |
MP00067 | PBM | Transfer from AT1G69310 | Download |
Annotation -- Nucleotide ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | |||
GenBank | GQ377431 | 1e-156 | GQ377431.1 (Populus tomentosa x P. bolleana) x P. tomentosa WRKY transcription factor 11 mRNA, partial cds. |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_011012232.1 | 0.0 | PREDICTED: probable WRKY transcription factor 57 | ||||
Refseq | XP_011012240.1 | 0.0 | PREDICTED: probable WRKY transcription factor 57 | ||||
Refseq | XP_011012248.1 | 0.0 | PREDICTED: probable WRKY transcription factor 57 | ||||
Refseq | XP_011012257.1 | 0.0 | PREDICTED: probable WRKY transcription factor 57 | ||||
Refseq | XP_011012275.1 | 0.0 | PREDICTED: probable WRKY transcription factor 57 | ||||
Refseq | XP_011012283.1 | 0.0 | PREDICTED: probable WRKY transcription factor 57 | ||||
Swissprot | Q9C983 | 9e-73 | WRK57_ARATH; Probable WRKY transcription factor 57 | ||||
TrEMBL | B9HXK9 | 0.0 | B9HXK9_POPTR; Uncharacterized protein | ||||
STRING | POPTR_0010s16760.1 | 0.0 | (Populus trichocarpa) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF10814 | 31 | 40 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT1G69310.2 | 2e-65 | WRKY DNA-binding protein 57 |
Publications ? help Back to Top | |||
---|---|---|---|
|