PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID CCG025069.1
Organism
Populus euphratica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
Family MYB
Protein Properties Length: 321aa    MW: 36396.7 Da    PI: 6.2557
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
CCG025069.1genomeLZUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding52.88.9e-172067148
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                     rg+WT eEd ll +++++ G g+W+  a++ g++Rt+k+c++rw++yl
      CCG025069.1 20 RGPWTLEEDTLLTRYIARNGEGRWNMLAKCAGLKRTGKSCRLRWLNYL 67
                     89********************************************97 PP
2Myb_DNA-binding52.11.5e-1673116146
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                      rg+ T++E++l+++++ ++G++ W++Ia++++ gRt++++k++w++
      CCG025069.1  73 RGNLTPQEQLLILELHSKWGNR-WSKIAQHLP-GRTDNEIKNYWRT 116
                      7999******************.*********.***********96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129414.1661567IPR017930Myb domain
SuperFamilySSF466892.13E-3018114IPR009057Homeodomain-like
SMARTSM007173.6E-141969IPR001005SANT/Myb domain
PfamPF002497.8E-152067IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.602.8E-222174IPR009057Homeodomain-like
CDDcd001671.06E-102267No hitNo description
PROSITE profilePS5129424.80668122IPR017930Myb domain
SMARTSM007172.7E-1572120IPR001005SANT/Myb domain
PfamPF002491.4E-1573116IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.603.1E-2375121IPR009057Homeodomain-like
CDDcd001671.32E-1177116No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009686Biological Processgibberellin biosynthetic process
GO:0009751Biological Processresponse to salicylic acid
GO:0016036Biological Processcellular response to phosphate starvation
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 321 aa     Download sequence    Send to blast
MLGVKRRIYN SSEEEGELRR GPWTLEEDTL LTRYIARNGE GRWNMLAKCA GLKRTGKSCR  60
LRWLNYLKPD VKRGNLTPQE QLLILELHSK WGNRWSKIAQ HLPGRTDNEI KNYWRTKVQK  120
EARQLNMEAS STKFLDAVRS FWMPRLLQKM EQASYSSYLT TLDSQSQADH GVRSPSSNSP  180
VPSSLSTSLC PPESRLAHYL NLGSENSSSV TSPHVLSANS DTISPQPEIL ENPTCSSLHG  240
DTFYSNLILS DTCYEEGSCY DPVGFNQASA GMGTYDNSPL ECQMAGGNWV FDSMEDTLWD  300
MDDMWQFRDL RETGIQSGPC R
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gv2_A2e-25171211104MYB PROTO-ONCOGENE PROTEIN
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription repressor of phosphate (Pi) starvation-induced genes. Regulates negatively Pi starvation responses via the repression of gibberellic acid (GA) biosynthesis and signaling. Modulates root architecture, phosphatase activity, and Pi uptake and accumulation. {ECO:0000269|PubMed:19529828}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00216DAPTransfer from AT1G68320Download
Motif logo
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Slightly induced by salicylic acid (PubMed:16463103). Induced reversibly in response to phosphate (Pi) deficiency but repressed in the presence of Pi, specifically in the leaves. Availability of Pi increases with decreased levels (PubMed:19529828). {ECO:0000269|PubMed:16463103, ECO:0000269|PubMed:19529828}.
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAB4345592e-32AB434559.1 Fagus crenata FcMYBS14 mRNA for transcription factor MYBS14, partial cds.
GenBankAB4345932e-32AB434593.1 Fagus crenata FcMYBC1 mRNA for transcription factor MYBC1, partial cds.
GenBankAB4346072e-32AB434607.1 Fagus crenata FcMYBD2 mRNA for transcription factor MYBD2, partial cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011007699.10.0PREDICTED: transcription factor MYB24
SwissprotQ9C9G72e-95MYB62_ARATH; Transcription factor MYB62
TrEMBLB9HWG30.0B9HWG3_POPTR; Uncharacterized protein
STRINGPOPTR_0010s13290.10.0(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF16393494
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G68320.16e-94myb domain protein 62
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]