PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID CCG024781.1
Organism
Populus euphratica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
Family C3H
Protein Properties Length: 367aa    MW: 39721.7 Da    PI: 6.8817
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
CCG024781.1genomeLZUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH24.93.5e-0893117126
                  --S---SGGGGTS--TTTTT-SS-SS CS
      zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHg 26 
                  +kt+lC+ f++ GtC+y  +C+FaH+
  CCG024781.1  93 FKTKLCCKFRA-GTCPYITNCNFAHS 117
                  69*********.*************8 PP
2zf-CCCH18.53.5e-06165190126
                  --S---SGGGGTS--TTTTT-SS-SS CS
      zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHg 26 
                  yk + C+ f+    C+yGd+C+F H+
  CCG024781.1 165 YKGRHCKKFYTEEGCPYGDNCTFLHD 190
                  78888********************7 PP
3zf-CCCH437.7e-14247272126
                  --S---SGGGGTS--TTTTT-SS-SS CS
      zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHg 26 
                  +kt++C+ +  tG+C++G++C+FaHg
  CCG024781.1 247 WKTRICNKWELTGYCPFGNKCHFAHG 272
                  8************************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:4.10.1000.106.4E-1490125IPR000571Zinc finger, CCCH-type
SuperFamilySSF902291.15E-790123IPR000571Zinc finger, CCCH-type
SMARTSM003560.003592118IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010312.8492119IPR000571Zinc finger, CCCH-type
PfamPF006421.8E-593117IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.101.7E-9162192IPR000571Zinc finger, CCCH-type
SuperFamilySSF902299.42E-8163192IPR000571Zinc finger, CCCH-type
SMARTSM003560.058164191IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.23164192IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.105.0E-17242276IPR000571Zinc finger, CCCH-type
SuperFamilySSF902294.06E-10243277IPR000571Zinc finger, CCCH-type
SMARTSM003562.9E-9246273IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.981246274IPR000571Zinc finger, CCCH-type
PfamPF006423.9E-11247272IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 367 aa     Download sequence    Send to blast
MDCNRDFSGG NVVHVIPISD PENWILNSSD SNSVWATEDD YRDWNNSDIL NDNASSNSNY  60
QSSTRSGSEP PNKKSKNNSQ ELNSKKSIGK MFFKTKLCCK FRAGTCPYIT NCNFAHSIEE  120
LRRPPPNWQE IVAAHEEEKG NTLDFREEFQ IPSIVGFGAE TPRSYKGRHC KKFYTEEGCP  180
YGDNCTFLHD EQSKNRESVA ISLGPGGYGG GSGGGSGAGA GAGAGGGGGG GGGNAGSTAV  240
NVKPSNWKTR ICNKWELTGY CPFGNKCHFA HGVGELHRYG GGLVDTEPKD SSSVPVESKQ  300
GGMPSKTPPE TVVASVTSVP HSDVYHLGVS SQRSSILIQR PGQRTHEKWK GPDKISRIYG  360
DWIDDIE
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011028166.10.0PREDICTED: zinc finger CCCH domain-containing protein 12-like
SwissprotQ9LQM31e-130C3H12_ARATH; Zinc finger CCCH domain-containing protein 12
TrEMBLB9GZ920.0B9GZ92_POPTR; Uncharacterized protein
STRINGPOPTR_0003s09240.10.0(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF77513342
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G32360.11e-129C3H family protein