PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

CCG024724.1

Organism

Populus euphratica

Taxonomic ID

75702

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus

Family

G2-like

Protein Properties

Length: 283aa MW: 31837.9 Da PI: 9.6726

Description

G2-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
CCG024724.1	genome	LZU	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	G2-like	102.3	3.1e-32	27	81	1	55
G2-like 1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 kprlrWt +LH+rFv+av++LGG++kAtPk++l+lm++kgLtl+h+kSHLQkYRl CCG024724.1 27 KPRLRWTADLHDRFVDAVTKLGGPDKATPKSMLRLMGLKGLTLYHLKSHLQKYRL 81 79****************************************************8 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.10.10.60	4.0E-31	24	82	IPR009057	Homeodomain-like
PROSITE profile	PS51294	10.964	24	84	IPR017930	Myb domain
SuperFamily	SSF46689	4.84E-16	27	84	IPR009057	Homeodomain-like
TIGRFAMs	TIGR01557	7.2E-24	27	82	IPR006447	Myb domain, plants
Pfam	PF00249	6.4E-8	29	80	IPR001005	SANT/Myb domain
Pfam	PF14379	4.2E-22	127	173	IPR025756	MYB-CC type transcription factor, LHEQLE-containing domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 283 aa Download sequence Send to blast
MEKTTFGGEG GSYPYENGVV MMTRDPKPRL RWTADLHDRF VDAVTKLGGP DKATPKSMLR 60 LMGLKGLTLY HLKSHLQKYR LGQQARRQNN TEQSKESRGA SYVNFSKGSS GTSTSSPRID 120 KEQGEISVAE ALNCQIEVQK TLQEELEVQK KLQMRIEAQG KYLQAILEKA QKSLSQNLND 180 DSNGNLKATR AHLTGFNSAV YSLMENLNAE DRKPSITDLK GINMKENCPA MHIQREGQAR 240 ETKDVKHHLQ GDSIHFDLNT KGTYDFVSAN GSELELKMLS YRR

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
6j4k_A	6e-19	27	80	2	55	Protein PHOSPHATE STARVATION RESPONSE 1
6j4k_B	6e-19	27	80	2	55	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_A	5e-19	27	80	1	54	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_B	5e-19	27	80	1	54	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_C	5e-19	27	80	1	54	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_D	5e-19	27	80	1	54	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_A	6e-19	27	80	2	55	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_C	6e-19	27	80	2	55	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_D	6e-19	27	80	2	55	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_F	6e-19	27	80	2	55	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_H	6e-19	27	80	2	55	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_J	6e-19	27	80	2	55	Protein PHOSPHATE STARVATION RESPONSE 1
Search in ModeBase

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_011028078.1	0.0	PREDICTED: myb family transcription factor APL-like isoform X1
Swissprot	C0SVS4	2e-85	PHLB_ARATH; Myb family transcription factor PHL11
TrEMBL	A0A2K2B4M5	0.0	A0A2K2B4M5_POPTR; Uncharacterized protein
STRING	POPTR_0003s09940.1	0.0	(Populus trichocarpa)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF5101	31	42

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G45580.1	3e-80	G2-like family protein

Publications ? help Back to Top
Petridis A,Döll S,Nichelmann L,Bilger W,Mock HP Arabidopsis thaliana G2-LIKE FLAVONOID REGULATOR and BRASSINOSTEROID ENHANCED EXPRESSION1 are low-temperature regulators of flavonoid accumulation. New Phytol., 2016. 211(3): p. 912-25 [PMID:27125220]