PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID CCG023931.1
Organism
Populus euphratica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
Family bHLH
Protein Properties Length: 176aa    MW: 19429.6 Da    PI: 7.1422
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
CCG023931.1genomeLZUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH30.75.7e-104686954
                 HHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
          HLH  9 ErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54
                  r RR+ri ++f  L++l+P       +K++ +++Le+A+ Y+k L
  CCG023931.1 46 ARERRHRISDRFKILQSLVPGG-----TKMDTVSMLEEAITYVKFL 86
                 699*****************87.....8****************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088815.4343786IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474591.83E-134295IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000836.62E-144390No hitNo description
SMARTSM003531.4E-124392IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.105.6E-124390IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000101.8E-74686IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 176 aa     Download sequence    Send to blast
MDYHSTTNPR SSVSSSAPKN GKEKRTGGKK SNGGVKLSTD PQSVAARERR HRISDRFKIL  60
QSLVPGGTKM DTVSMLEEAI TYVKFLKNQI LLHQTIMNSV DDERSLDYHL PAGSVSLPTE  120
QPSYLDSNLA SVVHPSSSLP CPDSYFQAEE NYTQFDAFDN GLACWWYHGT SSIGGQ
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011019235.11e-115PREDICTED: transcription factor bHLH140-like
TrEMBLB9HCY81e-105B9HCY8_POPTR; BHLH family protein
STRINGPOPTR_0006s10350.11e-105(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF71672846
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G01310.16e-30APRATAXIN-like