PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID CCG023633.1
Organism
Populus euphratica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
Family HSF
Protein Properties Length: 522aa    MW: 58183.8 Da    PI: 4.5116
Description HSF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
CCG023633.1genomeLZUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HSF_DNA-bind112.72.6e-35941862103
                   HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXXXXXXXXXXXXXX CS
  HSF_DNA-bind   2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksFkkgkkellekik 98 
                   Fl+k+y++++d+ l+ +isw + g+sfvv+d+eefa+ vLp+ Fkh+nf+SFvRQLn+YgF+k+++++         weF+++sF++g+k+ll++i+
   CCG023633.1  94 FLSKTYDLVDDRMLDPIISWGSIGESFVVWDPEEFARLVLPRNFKHNNFSSFVRQLNTYGFRKIDTDR---------WEFANESFRRGEKHLLKNIH 181
                   9****************************************************************999.........******************** PP

                   XXXXX CS
  HSF_DNA-bind  99 rkkse 103
                   r+ks+
   CCG023633.1 182 RRKST 186
                   **987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004154.1E-5790183IPR000232Heat shock factor (HSF)-type, DNA-binding
SuperFamilySSF467852.58E-3490183IPR011991Winged helix-turn-helix DNA-binding domain
Gene3DG3DSA:1.10.10.108.5E-3791183IPR011991Winged helix-turn-helix DNA-binding domain
PfamPF004471.1E-3094183IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000561.2E-1694117IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000561.2E-16132144IPR000232Heat shock factor (HSF)-type, DNA-binding
PROSITE patternPS004340133157IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000561.2E-16145157IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009408Biological Processresponse to heat
GO:0010200Biological Processresponse to chitin
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 522 aa     Download sequence    Send to blast
MSPEEDDAYL KSPHKYSSSM DCHQSSSAGS MFIEELSFPA AASCPLMDLE AFSYVSPTTS  60
AHPVSSSATA NEVDEEEEMP RPLECLQENP VPPFLSKTYD LVDDRMLDPI ISWGSIGESF  120
VVWDPEEFAR LVLPRNFKHN NFSSFVRQLN TYGFRKIDTD RWEFANESFR RGEKHLLKNI  180
HRRKSTQSQQ VGSHTGSLTE AGRSGLDSEV ERLRKERSVM MQEVIELQKQ QSGTVHDVQS  240
VNQRLQAAEQ RQKQMVSFLA KLFQNPAFLA RLKQKKEQGE IGSSRMKRKF VKHQQHQHAL  300
PESSMEGQIM RYMPDWRDIT LSSVVPDTSP ASIDQSPDYV SEGMVGLGLG SEAMPLPEIV  360
APDEFAISDE LGVGQGFIKT PEQVGEGQSS MQFEDPKLKG KIDMSPQNEV GLEYFVSFPE  420
DLGIEKSFPE LSSPGMERIV KQEDAWSLAF NTSAGMSSSS KVSWDNLVGY DMPELGSTSG  480
FSDIWDIGSG QAGGGLSMDK WLADESPVDE SDSQAGQPKD DK
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2ldu_A2e-229118817125Heat shock factor protein 1
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1269277ARLKQKKEQ
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKP0139790.0KP013979.1 Populus simonii heat shock transcription factor A3 (HsfA3) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011016541.10.0PREDICTED: heat stress transcription factor A-3
TrEMBLA0A0N7DK260.0A0A0N7DK26_9ROSI; Heat shock transcription factor A3
STRINGPOPTR_0006s11680.10.0(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF87823038
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G03720.11e-102heat shock transcription factor A3