PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | CCG023574.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
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Family | GATA | ||||||||
Protein Properties | Length: 187aa MW: 21460.6 Da PI: 8.6866 | ||||||||
Description | GATA family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | GATA | 50.9 | 2.2e-16 | 121 | 153 | 1 | 33 |
GATA 1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrkk 33 C++C+ kTp+WR gp g+ktLCnaCG++y CCG023574.1 121 CTHCQIDKTPQWRIGPLGPKTLCNACGVRYNTG 153 *****************************9765 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00401 | 3.4E-11 | 115 | 165 | IPR000679 | Zinc finger, GATA-type |
SuperFamily | SSF57716 | 9.5E-14 | 118 | 174 | No hit | No description |
Gene3D | G3DSA:3.30.50.10 | 7.6E-14 | 118 | 152 | IPR013088 | Zinc finger, NHR/GATA-type |
PROSITE profile | PS50114 | 9.934 | 119 | 150 | IPR000679 | Zinc finger, GATA-type |
CDD | cd00202 | 1.16E-13 | 120 | 171 | No hit | No description |
Pfam | PF00320 | 5.0E-14 | 121 | 153 | IPR000679 | Zinc finger, GATA-type |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0008270 | Molecular Function | zinc ion binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 187 aa Download sequence Send to blast |
MVSLFIYALT FFFPASDDVC NVSDDFDWIG SGLSAPKDPI ECVTDFLDGF KSTNELSFLE 60 DFGDFLGKSE EEIETTPSRD FKFGITKKKP RSKRRLKQRA WPTKDCVFSA LENHEFLKRV 120 CTHCQIDKTP QWRIGPLGPK TLCNACGVRY NTGRLFPEYR PAASPSFDQK KHSNLHKLIL 180 RRRANLI |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 87 | 96 | KKPRSKRRLK |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_011031206.1 | 1e-128 | PREDICTED: GATA transcription factor 7-like | ||||
TrEMBL | A0A3N7FUH9 | 1e-124 | A0A3N7FUH9_POPTR; Uncharacterized protein | ||||
STRING | POPTR_0005s06720.1 | 1e-113 | (Populus trichocarpa) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF16347 | 7 | 9 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G36240.1 | 1e-31 | GATA transcription factor 7 |