PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

CCG022990.1

Organism

Populus euphratica

Taxonomic ID

75702

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus

Family

M-type_MADS

Protein Properties

Length: 81aa MW: 9409.12 Da PI: 11.308

Description

M-type_MADS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
CCG022990.1	genome	LZU	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	SRF-TF	100	9.2e-32	9	59	1	51
S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS SRF-TF 1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51 krienk+nrqvtfskRr+g+lKKA+E+SvLCda+va+i+fs++gkl+eys+ CCG022990.1 9 KRIENKINRQVTFSKRRTGLLKKAHEISVLCDADVALIVFSTRGKLFEYST 59 79***********************************************96 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50066	32.24	1	61	IPR002100	Transcription factor, MADS-box
SMART	SM00432	9.1E-40	1	60	IPR002100	Transcription factor, MADS-box
CDD	cd00265	4.43E-36	2	61	No hit	No description
SuperFamily	SSF55455	1.26E-29	2	62	IPR002100	Transcription factor, MADS-box
PRINTS	PR00404	6.1E-32	3	23	IPR002100	Transcription factor, MADS-box
PROSITE pattern	PS00350	0	3	57	IPR002100	Transcription factor, MADS-box
Pfam	PF00319	2.4E-26	10	57	IPR002100	Transcription factor, MADS-box
PRINTS	PR00404	6.1E-32	23	38	IPR002100	Transcription factor, MADS-box
PRINTS	PR00404	6.1E-32	38	59	IPR002100	Transcription factor, MADS-box

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 81 aa Download sequence Send to blast
MGRGRVQLKR IENKINRQVT FSKRRTGLLK KAHEISVLCD ADVALIVFST RGKLFEYSTD 60 SRFFFFLQLS SFLFLHVVLA L

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5f28_A	3e-20	1	76	1	76	MEF2C
5f28_B	3e-20	1	76	1	76	MEF2C
5f28_C	3e-20	1	76	1	76	MEF2C
5f28_D	3e-20	1	76	1	76	MEF2C
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Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor involved in flower development. {ECO:0000250\|UniProtKB:Q0HA25}.

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AC208377	1e-133	AC208377.1 Populus trichocarpa clone JGIACSB249-L10, complete sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_011008142.1	2e-36	PREDICTED: truncated transcription factor CAULIFLOWER A-like
Swissprot	Q6E6S7	2e-36	AP1_VITVI; Agamous-like MADS-box protein AP1
TrEMBL	A0A426YYC6	3e-37	A0A426YYC6_ENSVE; Uncharacterized protein
STRING	POPTR_0004s11430.1	9e-37	(Populus trichocarpa)
STRING	cassava4.1_030691m	6e-37	(Manihot esculenta)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF119	33	360

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G60910.1	3e-37	AGAMOUS-like 8

Publications ? help Back to Top
Jaillon O, et al. The grapevine genome sequence suggests ancestral hexaploidization in major angiosperm phyla. Nature, 2007. 449(7161): p. 463-7 [PMID:17721507] Díaz-Riquelme J,Lijavetzky D,Martínez-Zapater JM,Carmona MJ Genome-wide analysis of MIKCC-type MADS box genes in grapevine. Plant Physiol., 2009. 149(1): p. 354-69 [PMID:18997115] Grimplet J,Martínez-Zapater JM,Carmona MJ Structural and functional annotation of the MADS-box transcription factor family in grapevine. BMC Genomics, 2016. 17: p. 80 [PMID:26818751]