PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

CCG022295.1

Organism

Populus euphratica

Taxonomic ID

75702

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus

Family

SRS

Protein Properties

Length: 332aa MW: 35960.8 Da PI: 7.1136

Description

SRS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
CCG022295.1	genome	LZU	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF702	227	3.5e-70	117	263	3	154
DUF702 3 sgtasCqdCGnqakkdCaheRCRtCCksrgfdCathvkstWvpaakrrerqqqlaaasskaaasaaeaaskrkrelkskkqsalsstklssaeskkel 100 +g++sCqdCGnqakkdC+h+RCRtCCksrgf+C+thvkstWvpa+krrerqqql+ ++++++ + + +++kr+re+ +s+l++t+l+++ + l CCG022295.1 117 AGSISCQDCGNQAKKDCMHMRCRTCCKSRGFECQTHVKSTWVPASKRRERQQQLNLLQQQQQLQIRGENPKRQREN---PSSSLACTRLANSM--SGL 209 6899******************************************************9999999999999985...99999999988775..568 PP DUF702 101 etsslPeevsseavfrcvrvssvddgeeelaYqtavsigGhvfkGiLydqGlee 154 e ++P+evss+a+frcvrvs++d++ee laYqtav+igGhvfkGiLyd+G+++ CCG022295.1 210 ELGNFPSEVSSPALFRCVRVSGIDESEEMLAYQTAVNIGGHVFKGILYDHGPDS 263 9999**********************************************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF05142	2.7E-66	119	262	IPR007818	Protein of unknown function DUF702
TIGRFAMs	TIGR01623	8.4E-28	121	163	IPR006510	Zinc finger, lateral root primordium type 1
TIGRFAMs	TIGR01624	1.0E-24	214	261	IPR006511	Lateral Root Primordium type 1, C-terminal

Sequence ? help Back to Top
Protein Sequence Length: 332 aa Download sequence Send to blast
MAGLFSLGRG SSSSNNQEDQ QNNNNPPTEI PQESWFWYKS EDIPYKSFEL WQQQQHQELL 60 HQRHQNPQQD LYSSAAGLGV GPSRTSINIS DESSSRSAAA AEAFMMMRPG GSGTGGAGSI 120 SCQDCGNQAK KDCMHMRCRT CCKSRGFECQ THVKSTWVPA SKRRERQQQL NLLQQQQQLQ 180 IRGENPKRQR ENPSSSLACT RLANSMSGLE LGNFPSEVSS PALFRCVRVS GIDESEEMLA 240 YQTAVNIGGH VFKGILYDHG PDSNYMAPGE TSSGGGGVQP LNLITAGTAT GGGGVTVAST 300 TAAFLDPSSL YPAPLNTFMA GQERKASREA VQ

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription activator that binds DNA on 5'-ACTCTAC-3' and promotes auxin homeostasis-regulating gene expression (e.g. YUC genes), as well as genes affecting stamen development, cell expansion and timing of flowering. Synergistically with other SHI-related proteins, regulates gynoecium, stamen and leaf development in a dose-dependent manner, controlling apical-basal patterning. Promotes style and stigma formation, and influences vascular development during gynoecium development. May also have a role in the formation and/or maintenance of the shoot apical meristem (SAM). {ECO:0000269\|PubMed:12361963, ECO:0000269\|PubMed:16740145, ECO:0000269\|PubMed:16740146, ECO:0000269\|PubMed:18811619, ECO:0000269\|PubMed:20154152, ECO:0000269\|PubMed:22318676}.

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Regulated by ESR1 and ESR2. {ECO:0000269\|PubMed:21976484}.

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	HG975441	3e-37	HG975441.1 Solanum pennellii chromosome ch02, complete genome.
GenBank	HG975514	3e-37	HG975514.1 Solanum lycopersicum chromosome ch02, complete genome.
GenBank	KC331910	3e-37	KC331910.1 Solanum lycopersicum expression of terpenoids 1 mRNA, complete cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_011025892.1	0.0	PREDICTED: protein SHI RELATED SEQUENCE 1-like
Swissprot	Q9SD40	1e-104	SRS1_ARATH; Protein SHI RELATED SEQUENCE 1
TrEMBL	U5G8I9	1e-167	U5G8I9_POPTR; Uncharacterized protein
STRING	POPTR_0007s13610.1	1e-168	(Populus trichocarpa)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF882	34	125

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G66350.1	1e-73	Lateral root primordium (LRP) protein-related

Publications ? help Back to Top
Estornell LH,Landberg K,Cierlik I,Sundberg E SHI/STY Genes Affect Pre- and Post-meiotic Anther Processes in Auxin Sensing Domains in Arabidopsis. Front Plant Sci, 2018. 9: p. 150 [PMID:29491878]