PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID CCG021976.1
Organism
Populus euphratica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
Family WRKY
Protein Properties Length: 550aa    MW: 59531.5 Da    PI: 6.8598
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
CCG021976.1genomeLZUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY101.16.4e-32206263260
                  --SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS-- CS
         WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhek 60 
                  dDgynWrKYGqK+vkgsefprsYY+Ct+++C+vkk  ers+ d++++ei+Y+g+H+h+k
  CCG021976.1 206 DDGYNWRKYGQKHVKGSEFPRSYYKCTHPNCEVKKLFERSH-DGQITEIIYKGTHDHPK 263
                  8****************************************.***************85 PP
2WRKY105.23.6e-33370428159
                  ---SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS
         WRKY   1 ldDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 
                  ldDgy+WrKYGqK v+g+++prsYY+Ct agCpv+k+ver+++dpk+v++tYeg+Hnh+
  CCG021976.1 370 LDDGYRWRKYGQKGVRGNPNPRSYYKCTNAGCPVRKHVERASHDPKAVITTYEGKHNHD 428
                  59********************************************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5081122.871200264IPR003657WRKY domain
SuperFamilySSF1182908.11E-25204264IPR003657WRKY domain
Gene3DG3DSA:2.20.25.801.0E-26204264IPR003657WRKY domain
SMARTSM007744.1E-34205263IPR003657WRKY domain
PfamPF031061.6E-24206262IPR003657WRKY domain
Gene3DG3DSA:2.20.25.803.8E-37355430IPR003657WRKY domain
SuperFamilySSF1182906.41E-29362430IPR003657WRKY domain
PROSITE profilePS5081138.32365430IPR003657WRKY domain
SMARTSM007744.8E-38370429IPR003657WRKY domain
PfamPF031066.2E-26371428IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009611Biological Processresponse to wounding
GO:0009961Biological Processresponse to 1-aminocyclopropane-1-carboxylic acid
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 550 aa     Download sequence    Send to blast
MDSNTSRSEV SDCGDPTRPE SGGGGARYKL MSPAKLPISR SACITIPPGL SPTSFLESPA  60
EPSPTTGTFT KPRTALGSLS STPYSATTVS STACGERKSD CFEFRPYARS NMVSADINHQ  120
RSTQCAQVQS QCHSQSFASP PLVKGEMAVS TNELSLSASL NMVTSVTSAP AEVDSDELNQ  180
TGLSSSGLQA SQSDHRAGSA PSMSSDDGYN WRKYGQKHVK GSEFPRSYYK CTHPNCEVKK  240
LFERSHDGQI TEIIYKGTHD HPKPQPSRRY ASGSVLSMQE DRFDKSSSLP NQDDKSPGAY  300
GQVPHAIEPN GALELSTGAN DDTGEGAEDD DDPFSKRRRL DAGGFDVTPV VKPIREPRVV  360
VQTLSEVDIL DDGYRWRKYG QKGVRGNPNP RSYYKCTNAG CPVRKHVERA SHDPKAVITT  420
YEGKHNHDVP TARTNSHDMA GPSAVNGPSR IRPDENETIS LDLGVGISST TENQSSDQQQ  480
ALHAELIKHE NQASGSSFRV VHATPITAYY GVLNGGMNQY GSRQIPGESR SIEIPPYPYP  540
QNMGRLLTGP
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wj2_A1e-35206430877Probable WRKY transcription factor 4
2lex_A1e-35206430877Probable WRKY transcription factor 4
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1335339KRRRL
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element. {ECO:0000250|UniProtKB:Q9SI37}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00455DAPTransfer from AT4G26640Download
Motif logo
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011007625.10.0PREDICTED: probable WRKY transcription factor 20
SwissprotQ93WV00.0WRK20_ARATH; Probable WRKY transcription factor 20
TrEMBLA0A2I4KKT00.0A0A2I4KKT0_POPTR; WRKY family protein
STRINGPOPTR_0001s37260.10.0(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF39463463
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G26640.20.0WRKY family protein