PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID CCG021552.1
Organism
Populus euphratica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
Family C3H
Protein Properties Length: 854aa    MW: 94994.4 Da    PI: 7.6406
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
CCG021552.1genomeLZUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH17.86e-06161180525
                  --SGGGGTS--TTTTT-SS-S CS
      zf-CCCH   5 lCrffartGtCkyGdrCkFaH 25 
                  lC++f + G C++G+ C+F H
  CCG021552.1 161 LCKDFVA-GRCRRGNHCQFLH 180
                  9******.************* PP
2zf-CCCH18.24.4e-06221239625
                  -SGGGGTS--TTTTT-SS-S CS
      zf-CCCH   6 CrffartGtCkyGdrCkFaH 25 
                  C +f++ G C++G++C++aH
  CCG021552.1 221 CTNFLK-GNCRRGESCRYAH 239
                  ******.************* PP
3zf-CCCH17.76.2e-06284304526
                  --SGGGGTS--TTTTT-SS-SS CS
      zf-CCCH   5 lCrffartGtCkyGdrCkFaHg 26 
                  +C+ffa+ G C+ G  C+F+H 
  CCG021552.1 284 PCKFFAA-GNCQNGKYCRFSHH 304
                  7**9999.*************6 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5010314.211156183IPR000571Zinc finger, CCCH-type
SMARTSM003564.4E-4156182IPR000571Zinc finger, CCCH-type
SuperFamilySSF902291.7E-5158181IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.103.2E-6160184IPR000571Zinc finger, CCCH-type
SMARTSM003560.01215241IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.155215242IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010313.197279306IPR000571Zinc finger, CCCH-type
SMARTSM003560.03281305IPR000571Zinc finger, CCCH-type
SuperFamilySSF902293.53E-5282304IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 854 aa     Download sequence    Send to blast
MSGSGRKRSS KWDLKEGSRI SLEDVEDNAL PGKAGIPFRD KESQCDWLPP EAAGSTCSKW  60
SAMEPLPGRR GSHKDDNIDG DHSRTLKSTY EDESYGTRMS PGLDEWRQQS FRNSPKNEYK  120
RLRRRSPSRS RSRSRSPVHG FRGESGAYDR TRSRSGVSAQ LCKDFVAGRC RRGNHCQFLH  180
QDTETYEDDW ERPRKTAASK YPMSHDTKQY PMGSGRSANC CTNFLKGNCR RGESCRYAHH  240
GDSNPSSRGS ANEVIRERDN DRRHRYASPE RRAERETRRA ADIPCKFFAA GNCQNGKYCR  300
FSHHDQTLAS PGKRSRDVRW PPSQNSDELE KSWNDPKWSD SHTSDSAKLS EDKNEKLDAP  360
NLRLSARHME DGWGHNPVED KTHSNPPTNE VVEIDKKEAF QWKTENSGDN TNVSENWLGD  420
MEMSPDWNYR LQPSNHINKG SSHELQESSG RMHDTAAVML PISKETSSIQ QGFNLKEVGG  480
SALPHDDDGV TKTASSYVDI SANVLASQSF NKNGQSSNTS HILNLNAVGQ IQEAILTNPS  540
RGGTTTNPQN QTLFQERTVI NIPDTGNPNV PHANLGIPTA QNMASNEHLT QLTSLSASLV  600
QLFVNGHQLP QLYEAHNSHD GTFANSEGTV TVKPDSAVTI QPNQAVEPRK QYDPICDSVE  660
PGKLNVNTSP TDKKLELLSK SLSPSSLAAA PNGDDFNKFF LEQESNEKSS LLNQPAPAAS  720
SEATKENNGV GSGEDNTVQE QDKTAQENGP LENSDGDGKA DESKKNKDAK GNRAFKFALV  780
EFVKDLLKPA WKEGQISKDA YKNIVKKVVD KVTSTMHSAS IPTTQEKIEL YLSVSKPKLT  840
KLVQAYVEKF QKDK
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011007564.10.0PREDICTED: zinc finger CCCH domain-containing protein 38-like isoform X2
TrEMBLA0A3N7F0G10.0A0A3N7F0G1_POPTR; Uncharacterized protein
STRINGPOPTR_0005s06240.10.0(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF40993252
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G33835.14e-16C3H family protein