PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID CCG021425.1
Organism
Populus euphratica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
Family ERF
Protein Properties Length: 193aa    MW: 21142.7 Da    PI: 6.5377
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
CCG021425.1genomeLZUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP252.41.3e-163684355
          AP2  3 ykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55
                 ++GVr ++ +gr+v+eIr p   gk++r++lg+fg++e+Aa+a++ a+  l+g
  CCG021425.1 36 FHGVRKRS-WGRYVSEIRLP---GKKTRVWLGSFGSPEMAARAHDSAAFFLKG 84
                 79***888.**********8...557***********************9988 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003801.8E-293598IPR001471AP2/ERF domain
PROSITE profilePS5103219.4673592IPR001471AP2/ERF domain
PfamPF008471.8E-103684IPR001471AP2/ERF domain
CDDcd000183.33E-273694No hitNo description
Gene3DG3DSA:3.30.730.104.4E-273694IPR001471AP2/ERF domain
PRINTSPR003672.7E-73647IPR001471AP2/ERF domain
SuperFamilySSF541714.9E-183694IPR016177DNA-binding domain
PRINTSPR003672.7E-75874IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 193 aa     Download sequence    Send to blast
MSITQEPPGL KTNPLESEPT SERKSKKRTR QRDAPFHGVR KRSWGRYVSE IRLPGKKTRV  60
WLGSFGSPEM AARAHDSAAF FLKGNSASLN FPDSVGSLPR PKSCSSKDIQ LAAAKAATGF  120
DETRVGNGVG FEDCESGGEP DSSIWLGLGE IETVSYEEVK RTPLPSPLRF DSVSGNDEVL  180
YMNDEELLFA TCL
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A1e-133697668ATERF1
3gcc_A1e-133697668ATERF1
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
12541KKRTRQRDAPFHGVRKR
Functional Description ? help Back to Top
Source Description
UniProtPutative transcriptional activator.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Slightly induced by cold stress. {ECO:0000269|PubMed:11798174}.
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankEF1559350.0EF155935.1 Populus trichocarpa TINY-like protein (TINYL16) gene, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011007489.11e-140PREDICTED: ethylene-responsive transcription factor ERF023-like
SwissprotQ391271e-32TINY_ARATH; Ethylene-responsive transcription factor TINY
TrEMBLA9PL851e-135A9PL85_POPTR; TINY-like protein
STRINGPOPTR_0409s00200.11e-135(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF137561621
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G25810.16e-35ERF family protein
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]