PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID CCG021200.1
Organism
Populus euphratica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
Family GRAS
Protein Properties Length: 663aa    MW: 74982.2 Da    PI: 4.7195
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
CCG021200.1genomeLZUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS21.52.5e-07660255
         GRAS  2 velLlecAeavssgdlelaqalLarlsel.aspdgdpmqRlaayfteALaarlar 55
                  + Ll+ A+a+++gdl+la+++ ++++ l  +++ +++++l+ +++eAL +rl++
  CCG021200.1  6 LNKLLDSAKAIEDGDLNLAETVFKEIKRLnDANTSTATRKLVRFYAEALIRRLYK 60
                 5789************************95555669*****************98 PP
2GRAS157.11.5e-4864335100374
         GRAS 100 qaIleavegeervHiiDfd.isqGlQWpaLlqaLasRpegppslRiTgvgspesgskeeleetgerLakfAeelgv.pfefnvlvakrledleleeLr 195
                  + Il+av g+++vH+i f+ ++  +    L++ L ++ ++  s+++T + ++ s+++e l+e+ + La  A++l++ +f+ + + a++ + +  ++L+
  CCG021200.1  64 HSILDAVVGKKKVHVINFSnMEFNMMIRDLMRDLVKQVGSGLSFQVTNIRPKLSNNEEYLQEMDRVLAAEAKTLRLtDFKLDHVFANTAAGIVESTLN 161
                  57****************8356689999***********************9999********************946*****999999999899998 PP

         GRAS 196 vkp...gEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpres.eerikvErel 289
                  +k+   +Ea++V++ ++lh+l   +++le+    vL+ +k+l+P+++v+veqea+hns++ l+r+++++ yys++fds+e+   + + e++i+ E   
  CCG021200.1 162 LKRtseDEAIVVKWEFELHKLILVPGALEK----VLSKLKELRPEIMVIVEQEANHNSPDILDRLAQSFPYYSSVFDSIEKDTTEYDlENKISWEMD- 254
                  888888****************99999999....*********************************************988888885666666666. PP

         GRAS 290 lgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgslvlgWkdrpLvsvSaWr 374
                  ++r+i+nvva e  ++ erhet + Wr++l+++GF+pv+   +       l +      y++e ++g+ +l   + pLv +SaW+
  CCG021200.1 255 FRRQITNVVAREDIQHAERHETQAWWRDQLRRSGFHPVRQWFNHIR--GFLFSDLT--QYTIEGKNGCPFLRRYTVPLVITSAWK 335
                  *************************************985544443..33445444..5*************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098522.5031319IPR005202Transcription factor GRAS
PfamPF035148.8E-5660IPR005202Transcription factor GRAS
PfamPF035145.3E-4664335IPR005202Transcription factor GRAS
Sequence ? help Back to Top
Protein Sequence    Length: 663 aa     Download sequence    Send to blast
MATLLLNKLL DSAKAIEDGD LNLAETVFKE IKRLNDANTS TATRKLVRFY AEALIRRLYK  60
LSHHSILDAV VGKKKVHVIN FSNMEFNMMI RDLMRDLVKQ VGSGLSFQVT NIRPKLSNNE  120
EYLQEMDRVL AAEAKTLRLT DFKLDHVFAN TAAGIVESTL NLKRTSEDEA IVVKWEFELH  180
KLILVPGALE KVLSKLKELR PEIMVIVEQE ANHNSPDILD RLAQSFPYYS SVFDSIEKDT  240
TEYDLENKIS WEMDFRRQIT NVVAREDIQH AERHETQAWW RDQLRRSGFH PVRQWFNHIR  300
GFLFSDLTQY TIEGKNGCPF LRRYTVPLVI TSAWKPELAQ SDGGSDNKEN VGSPESMLLG  360
LEFNDLSIIQ NKCEEEGDPT IMREGNVWSS ECPSINEIAA SAEIFDILEY VCHVYKLPLA  420
LTWISDGRDP AKNYEGKNVL RVEDTACYVN DLGATEFVEI CAEFDIEEGQ GVAGKALLSD  480
IYFVPDVSEL DPADYPFVYE AWEFGLHGAV AIKLRSTCRS SMDYMLEFFL PSKMREISEK  540
QLLVNKILSA LQKSCRNSWI VCGMDLNVAD VVSEVTAAEM SDITLMPNSG NSPSASNADG  600
SNPNNILGWN MLSPVGDLVE ICETDEKETG ESKAILGPAS NADKEMVFSR LQRSTRLHLQ  660
NKS
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011015945.10.0PREDICTED: DELLA protein GAIP-B-like
TrEMBLA0A2K1ZTT20.0A0A2K1ZTT2_POPTR; Uncharacterized protein
STRINGPOPTR_0007s01550.10.0(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF1790237
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G01570.14e-58GRAS family protein