PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID CCG021189.2
Organism
Populus euphratica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
Family B3
Protein Properties Length: 494aa    MW: 55461 Da    PI: 9.317
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
CCG021189.2genomeLZUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B360.62.7e-19126216199
                  EEEE-..-HHHHTT-EE--HHH.HTT.---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE CS
           B3   1 ffkvltpsdvlksgrlvlpkkfaeeh.ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvf 97 
                  f+k l++s+v +  ++ lp +f+++h  +    ++t+tl+de g+++++k+i  k++    l++GW++F+ a++L egD +vF+l+g+ +   +v ++
  CCG021189.2 126 FVKSLVRSHVASCFWMGLPGTFCRAHlPS---VDTTVTLQDECGKEFKMKYIAYKTG----LSAGWRQFCVAHQLFEGDALVFQLIGSCSL--KVYII 214
                  89************************533...3569***************666665....9************************96666..88888 PP

                  -S CS
           B3  98 rk 99 
                  r+
  CCG021189.2 215 RA 216
                  76 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.101.7E-20119217IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019361.9E-23120217IPR015300DNA-binding pseudobarrel domain
CDDcd100173.47E-24124215No hitNo description
PROSITE profilePS5086312.83126217IPR003340B3 DNA binding domain
PfamPF023624.0E-17126216IPR003340B3 DNA binding domain
SMARTSM010192.1E-21126217IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 494 aa     Download sequence    Send to blast
MSGRVKKEVE ETDFIKPLLF NKEQLKSVKD GKQKSAMEAT EKHLKIKRRY SDPKLKFVRT  60
SLLSCCCFGN LLHPKPKAVI SGHSGKCIWQ NKAPVERSNT VGDLKSSAMI RAEEVQSNLE  120
PAFPSFVKSL VRSHVASCFW MGLPGTFCRA HLPSVDTTVT LQDECGKEFK MKYIAYKTGL  180
SAGWRQFCVA HQLFEGDALV FQLIGSCSLK VYIIRANDLT EVDGALCLLN LDAQIKQNVA  240
GNAEMKTAAC KSSKRKRPRS LPQAVVQKKN KKSGQLRLSV PQAGQPAEQS ENDSEEVGSE  300
VLEGFKLSLP AVHFKDIKSF EDFNILVDGL VLDSELSEDI RNKYYKLCCN QNSFLHDNLI  360
KGVNFKLIAG IISETVNIAD AMRACTLTTS RDKFATWDKA LKASELFGMN VGFLRARLSR  420
LLRLAFDSEG ATKTRRYLEA RFERVLTEDE IKSLEAKLVE LKEAYERYGA NAERLKSKAE  480
GYDLKFQEQV LAPW
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024457977.10.0B3 domain-containing protein Os01g0234100 isoform X2
TrEMBLA0A2K2AGF90.0A0A2K2AGF9_POPTR; Uncharacterized protein
STRINGPOPTR_0005s18090.10.0(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF10073398
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G19184.15e-38B3 family protein