PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | CCG020196.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
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Family | M-type_MADS | ||||||||
Protein Properties | Length: 84aa MW: 9668.35 Da PI: 10.9705 | ||||||||
Description | M-type_MADS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SRF-TF | 86.7 | 1.3e-27 | 12 | 62 | 1 | 51 |
S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS SRF-TF 1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51 k+i+n+ rqvtfskRr g++KKA+ELS+LCdae+a+ +fs tgkl+eys+ CCG020196.1 12 KKIDNTAARQVTFSKRRRGLFKKAYELSTLCDAEIALTVFSATGKLFEYSN 62 68***********************************************95 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF55455 | 2.35E-27 | 4 | 64 | IPR002100 | Transcription factor, MADS-box |
PROSITE profile | PS50066 | 29.1 | 4 | 64 | IPR002100 | Transcription factor, MADS-box |
SMART | SM00432 | 3.4E-37 | 4 | 63 | IPR002100 | Transcription factor, MADS-box |
PROSITE pattern | PS00350 | 0 | 6 | 60 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 1.3E-27 | 6 | 26 | IPR002100 | Transcription factor, MADS-box |
CDD | cd00265 | 1.04E-32 | 6 | 64 | No hit | No description |
Pfam | PF00319 | 1.6E-25 | 13 | 60 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 1.3E-27 | 26 | 41 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 1.3E-27 | 41 | 62 | IPR002100 | Transcription factor, MADS-box |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 84 aa Download sequence Send to blast |
MVKMTRKKIQ IKKIDNTAAR QVTFSKRRRG LFKKAYELST LCDAEIALTV FSATGKLFEY 60 SNTSKIIFLE GKGKGERSLG RNWY |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5f28_A | 2e-20 | 4 | 64 | 1 | 61 | MEF2C |
5f28_B | 2e-20 | 4 | 64 | 1 | 61 | MEF2C |
5f28_C | 2e-20 | 4 | 64 | 1 | 61 | MEF2C |
5f28_D | 2e-20 | 4 | 64 | 1 | 61 | MEF2C |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Putative transcription factor that coordinates gene expression underlying the differentiation of the pedicel abscission zone. May also be involved in the maintenance of the inflorescence meristem state. |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | CU229226 | 3e-58 | CU229226.1 Populus EST from mild drought-stressed leaves. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_024461638.1 | 2e-38 | MADS-box protein JOINTLESS | ||||
Swissprot | Q9FUY6 | 5e-28 | JOIN_SOLLC; MADS-box protein JOINTLESS | ||||
TrEMBL | A0A2K1ZSW9 | 4e-37 | A0A2K1ZSW9_POPTR; Uncharacterized protein | ||||
STRING | POPTR_0007s03270.1 | 6e-40 | (Populus trichocarpa) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF119 | 33 | 360 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G22540.1 | 3e-29 | MIKC_MADS family protein |
Publications ? help Back to Top | |||
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