PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID CCG020125.1
Organism
Populus euphratica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
Family C3H
Protein Properties Length: 867aa    MW: 96161.2 Da    PI: 8.3306
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
CCG020125.1genomeLZUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH18.14.9e-06227245625
                  -SGGGGTS--TTTTT-SS-S CS
      zf-CCCH   6 CrffartGtCkyGdrCkFaH 25 
                  C+ f++ G C++G++C++aH
  CCG020125.1 227 CNEFLK-GSCRRGESCRYAH 245
                  9*****.************* PP
2zf-CCCH19.32e-06290310526
                  --SGGGGTS--TTTTT-SS-SS CS
      zf-CCCH   5 lCrffartGtCkyGdrCkFaHg 26 
                  +C+ffa+ G C+ G  C+F+H 
  CCG020125.1 290 PCKFFAA-GNCRNGKYCRFSHN 310
                  7**9999.*************6 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5010314.765165192IPR000571Zinc finger, CCCH-type
SMARTSM003564.1E-4165191IPR000571Zinc finger, CCCH-type
SuperFamilySSF902292.09E-5167190IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.101.7E-5169193IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010313.028221248IPR000571Zinc finger, CCCH-type
SMARTSM003560.043221247IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010313.873285312IPR000571Zinc finger, CCCH-type
SMARTSM003560.0024287311IPR000571Zinc finger, CCCH-type
SuperFamilySSF902291.57E-5290317IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 867 aa     Download sequence    Send to blast
MKEGAAASVR MSGSGRKRSS KWDLKEGSRI SFEDVEDNTW PGKAGISFHD KESRRDWLPP  60
EAAGGTRSKW SAMEPLPGRR SSRRDDNIDE DRSRTLKATY EDESYGTRMS PGLDEWRQKS  120
FRNSPKNEYK RTRRSRSRSW SRSLSPVHGF GRESGAHERT RSISGVSAQL CKDFVSGRCR  180
RGSHCPFLHQ DTETCEDDWE RRPRKAAASK YPGKQYPVGS GRSADCCNEF LKGSCRRGES  240
CRYAHHGASD PSSRGSANDG IRERDNDRRH RYASPERRAE RETRRAADIP CKFFAAGNCR  300
NGKYCRFSHN DQTPSPEKRS RDGRWPPSQN SDDLEKSWND PKWSECHTSD AAKLSENKNE  360
KLDAPELRLS VRCMEDEWGH NLVENKTHNN PPANEVAEND KKEALPLKTE NAGDNPNVSE  420
QRAPENWLGD MEMSPDWNYK LQPPNHINKG DHASLSSCEL QDASGRARDA PAIMPPISNE  480
TSSIQQGYNL KEIGGSALPH DDGVTGKTAG SYINISSNAL ATQSFNKNGL SSIASPIPNL  540
NAVGQIQEAI LTNPPRGGTM MAPQNQTLVQ DRKMINIPDI GNVNAPLVNL GIPMAQNMAS  600
NEHLTQLTSL SVSLAQFLAN GQQLPQLYAA CNSHNGTFAN SEGTVKPDSM VTIQSNQAVE  660
PRKQYDPICD SVEPGKHHVN TNPPDQKLEL LSKNLSPSSL SAGLIGGDFN KFHSEQEFID  720
KSSQLNQPGS GVSSEANKEN NGVGSEESNK VQEQDKSAQE NGPLENSDGD GKADESKKNK  780
DAKGNRAFKF ALVEFVKDLL KPAWKEGQMS KDAYKNIVKR VVDKVTGTMQ SASIPTTQEK  840
IEQYLSVSKP KLTKLVQAYV EKFQKDK
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC2134930.0AC213493.1 Populus trichocarpa clone POP014-L13, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011022964.10.0PREDICTED: zinc finger CCCH domain-containing protein 38-like isoform X1
RefseqXP_011022965.10.0PREDICTED: zinc finger CCCH domain-containing protein 38-like isoform X1
TrEMBLB9HEQ30.0B9HEQ3_POPTR; Uncharacterized protein
STRINGPOPTR_0007s03970.20.0(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF40993252
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G33835.15e-18C3H family protein