PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

CCG020098.1

Organism

Populus euphratica

Taxonomic ID

75702

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus

Family

NAC

Protein Properties

Length: 196aa MW: 22161.9 Da PI: 4.4529

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
CCG020098.1	genome	LZU	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	98.1	1.3e-30	10	126	1	128
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlskkge 98 lppGf F+Ptdeelv ++L++k++ +++ ++i+++++y ++Pw+L+ k+ ++ ++wy+Fs+ + n++t++g+Wk+ ++++++s+ g+ CCG020098.1 10 LPPGFVFSPTDEELVLHFLHRKASLLPCNP-DIIPDLGLYPHDPWQLEGKALSSGNQWYYFSRVME--------NQVTENGFWKSLDTEEPIFSSAGK 98 79***********************999.99***********77778899**9755........6789**************** PP NAM 99 lvglkktLvfykgrapkgektdWvmheyrl 128 +vglkk Lv+ +g++t+W+m+ey+l CCG020098.1 99 KVGLKKCLVYCI--GADGVETSWMMQEYHL 126 ******95..56788*******98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF101941	1.96E-38	9	153	IPR003441	NAC domain
PROSITE profile	PS51005	36.647	10	155	IPR003441	NAC domain
Pfam	PF02365	8.4E-20	11	126	IPR003441	NAC domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 196 aa Download sequence Send to blast
MGDHGCSGNL PPGFVFSPTD EELVLHFLHR KASLLPCNPD IIPDLGLYPH DPWQLEGKAL 60 SSGNQWYYFS RVMENQVTEN GFWKSLDTEE PIFSSAGKKV GLKKCLVYCI GADGVETSWM 120 MQEYHLCNSK LSGTSYKRKK KLDCHQWILC RVYEREGSCI QNAGNTTDDD DGTELSCLDE 180 MFLSMDDDLD DISFPN

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1ut4_A	8e-32	9	159	16	169	NO APICAL MERISTEM PROTEIN
1ut4_B	8e-32	9	159	16	169	NO APICAL MERISTEM PROTEIN
1ut7_A	8e-32	9	159	16	169	NO APICAL MERISTEM PROTEIN
1ut7_B	8e-32	9	159	16	169	NO APICAL MERISTEM PROTEIN
3swm_A	8e-32	9	159	19	172	NAC domain-containing protein 19
3swm_B	8e-32	9	159	19	172	NAC domain-containing protein 19
3swm_C	8e-32	9	159	19	172	NAC domain-containing protein 19
3swm_D	8e-32	9	159	19	172	NAC domain-containing protein 19
3swp_A	8e-32	9	159	19	172	NAC domain-containing protein 19
3swp_B	8e-32	9	159	19	172	NAC domain-containing protein 19
3swp_C	8e-32	9	159	19	172	NAC domain-containing protein 19
3swp_D	8e-32	9	159	19	172	NAC domain-containing protein 19
4dul_A	8e-32	9	159	16	169	NAC domain-containing protein 19
4dul_B	8e-32	9	159	16	169	NAC domain-containing protein 19
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Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor that influences tracheary elements and xylem development by negatively regulating secondary cell wall fiber synthesis and programmed cell death. {ECO:0000269\|PubMed:18069942, ECO:0000269\|PubMed:20458494}.

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AC216598	1e-131	AC216598.1 Populus trichocarpa clone POP037-D13, complete sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_011022932.1	1e-146	PREDICTED: NAC transcription factor 25-like
Swissprot	Q8GWK6	6e-63	NC104_ARATH; NAC domain-containing protein 104
TrEMBL	B9HES9	1e-141	B9HES9_POPTR; Uncharacterized protein
STRING	POPTR_0007s04250.1	1e-142	(Populus trichocarpa)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF1736	33	95

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G64530.1	1e-60	xylem NAC domain 1

Publications ? help Back to Top
Zhao C, et al. XYLEM NAC DOMAIN1, an angiosperm NAC transcription factor, inhibits xylem differentiation through conserved motifs that interact with RETINOBLASTOMA-RELATED. New Phytol., 2017. 216(1): p. 76-89 [PMID:28742236] Tang N, et al. Natural variation at XND1 impacts root hydraulics and trade-off for stress responses in Arabidopsis. Nat Commun, 2018. 9(1): p. 3884 [PMID:30250259]