PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

CCG020006.1

Organism

Populus euphratica

Taxonomic ID

75702

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus

Family

CAMTA

Protein Properties

Length: 1081aa MW: 121279 Da PI: 5.2891

Description

CAMTA family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
CCG020006.1	genome	LZU	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	CG-1	178.8	6.6e-56	20	136	2	118
CG-1 2 lkekkrwlkneeiaaiLenfekheltlelktrpksgsliLynrkkvryfrkDGyswkkkkdgktvrEdhekLKvggvevlycyYahseenptfqrrcy 99 ++ ++rwl++ ei++iL n+++++++ e+++ p+sgsl+L++rk++ryfrkDG++w+kkkdgktv+E+he+LK g+v+vl+cyYah+e+n++fqrr+y CCG020006.1 20 VEAQHRWLRPAEICEILSNYQRFRIAPEPAHMPPSGSLFLFDRKVLRYFRKDGHNWRKKKDGKTVKEAHERLKSGSVDVLHCYYAHGEDNENFQRRSY 117 6779******************************************************************************************** PP CG-1 100 wlLeeelekivlvhylevk 118 wlLeeel++ivlvhy+evk CCG020006.1 118 WLLEEELSHIVLVHYREVK 136 **************986 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51437	81.113	15	141	IPR005559	CG-1 DNA-binding domain
SMART	SM01076	8.9E-77	18	136	IPR005559	CG-1 DNA-binding domain
Pfam	PF03859	5.9E-49	21	134	IPR005559	CG-1 DNA-binding domain
Pfam	PF01833	1.7E-4	503	586	IPR002909	IPT domain
SuperFamily	SSF81296	1.71E-15	503	588	IPR014756	Immunoglobulin E-set
Gene3D	G3DSA:2.60.40.10	3.3E-4	503	589	IPR013783	Immunoglobulin-like fold
SuperFamily	SSF48403	5.6E-15	678	794	IPR020683	Ankyrin repeat-containing domain
Gene3D	G3DSA:1.25.40.20	5.5E-16	682	795	IPR020683	Ankyrin repeat-containing domain
CDD	cd00204	3.90E-11	689	792	No hit	No description
PROSITE profile	PS50297	16.547	700	804	IPR020683	Ankyrin repeat-containing domain
PROSITE profile	PS50088	9.778	733	765	IPR002110	Ankyrin repeat
SMART	SM00248	0.011	733	762	IPR002110	Ankyrin repeat
Pfam	PF00023	5.4E-4	733	764	IPR002110	Ankyrin repeat
SMART	SM00248	3300	772	801	IPR002110	Ankyrin repeat
SuperFamily	SSF52540	1.09E-7	903	957	IPR027417	P-loop containing nucleoside triphosphate hydrolase
SMART	SM00015	2	906	928	IPR000048	IQ motif, EF-hand binding site
Pfam	PF00612	0.0045	909	927	IPR000048	IQ motif, EF-hand binding site
PROSITE profile	PS50096	8.206	909	936	IPR000048	IQ motif, EF-hand binding site
SMART	SM00015	0.0039	929	951	IPR000048	IQ motif, EF-hand binding site
PROSITE profile	PS50096	9.597	930	954	IPR000048	IQ motif, EF-hand binding site
Pfam	PF00612	2.2E-4	932	951	IPR000048	IQ motif, EF-hand binding site

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0009409	Biological Process	response to cold
GO:0010150	Biological Process	leaf senescence
GO:0042742	Biological Process	defense response to bacterium
GO:0050832	Biological Process	defense response to fungus
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding
GO:0005516	Molecular Function	calmodulin binding

Sequence ? help Back to Top
Protein Sequence Length: 1081 aa Download sequence Send to blast
MADTRRYPLG NQLDIQQILV EAQHRWLRPA EICEILSNYQ RFRIAPEPAH MPPSGSLFLF 60 DRKVLRYFRK DGHNWRKKKD GKTVKEAHER LKSGSVDVLH CYYAHGEDNE NFQRRSYWLL 120 EEELSHIVLV HYREVKQGTR TNFNRIKEHE ECIPYSQETE DTMPSSEMDT SVSSGFHPNG 180 YQVPTRTTDT ASMNSAQASE YEDAESVYNN QASSRFHSFL EVQKPAMEKI DTGSSVHYDH 240 MTFPSDYQGI LSAVPGMDFI SLAQVDKTKE TNGTESACEP QKVTDLPSWD DVLENGACGI 300 ESVPFQTLLS QDDTEGIIPK QDGILEKLLT NSFDKREDIG SHILDQEAWQ SMDGVSSHLL 360 KWSVDQKLLL DSGYDLTARF PDEQLDSGNL INTLEPLCTQ ENDILIQNDQ GMTLEGKPMY 420 SSLVKHHILD GSGTEGLKKL DSFTRWMSKE LGDVEPQVQS SSGSYWITVE SENGVDDSSN 480 PSQGNLDAYL LSPSLSQDQL FSIIDFSPNW AYAGTEIKVL IMGRFLKGRE AAENFQWSIM 540 FGEVEVPAEV IADGVLRCNT PSHKAGRIPF YVTCSNRVAC SEVREFEYLS HTQDITYNYR 600 DSVTEDLNMR FGKLLSLSSV SPSKYDSSSV DEILSSKINS LLNEDNETWD QMFKLTSEEG 660 FSSEKVKERL VQKLLKEQLH VWLLQKASEG GKGPSILDEG GQGVLHFAAA LGYDWALEPT 720 IVAGVSVNFR DVNGWTALHW AASYGRERTV ASLIHLGAAP GALTDPTPTY PTSRTPADLA 780 SANGHKGISG FLAESALSAH LSSLNLEKQD GKAAECSGTQ ASQTVSGCNA TPVNDADLPS 840 GLPLKDSLAA VCNATQAAAR IHQVFRVQSF QKKQLKEYGD DKLGMSHERA LSLIAVKSQK 900 AGQYDEPVHA AIRIQNKFRG WKGRKEFLII RQRIVKIQAH VRGHQVRKNY RKIIWSVGIL 960 DKIILRWRRK GSGLRGFKSE ALTDGSSMQV VQSKDDDDDF LKEGRRQTEE RSQIALARVK 1020 SMHQHPEARE QYCRLRNVVA EIQEAKAMWE WANNSEVMAE FDELVDLGTS MDDDSFMPSN 1080 S

Sequence ? help Back to Top

Protein Sequence Length: 1081 aa Download sequence Send to blast

MADTRRYPLG NQLDIQQILV EAQHRWLRPA EICEILSNYQ RFRIAPEPAH MPPSGSLFLF  60
DRKVLRYFRK DGHNWRKKKD GKTVKEAHER LKSGSVDVLH CYYAHGEDNE NFQRRSYWLL  120
EEELSHIVLV HYREVKQGTR TNFNRIKEHE ECIPYSQETE DTMPSSEMDT SVSSGFHPNG  180
YQVPTRTTDT ASMNSAQASE YEDAESVYNN QASSRFHSFL EVQKPAMEKI DTGSSVHYDH  240
MTFPSDYQGI LSAVPGMDFI SLAQVDKTKE TNGTESACEP QKVTDLPSWD DVLENGACGI  300
ESVPFQTLLS QDDTEGIIPK QDGILEKLLT NSFDKREDIG SHILDQEAWQ SMDGVSSHLL  360
KWSVDQKLLL DSGYDLTARF PDEQLDSGNL INTLEPLCTQ ENDILIQNDQ GMTLEGKPMY  420
SSLVKHHILD GSGTEGLKKL DSFTRWMSKE LGDVEPQVQS SSGSYWITVE SENGVDDSSN  480
PSQGNLDAYL LSPSLSQDQL FSIIDFSPNW AYAGTEIKVL IMGRFLKGRE AAENFQWSIM  540
FGEVEVPAEV IADGVLRCNT PSHKAGRIPF YVTCSNRVAC SEVREFEYLS HTQDITYNYR  600
DSVTEDLNMR FGKLLSLSSV SPSKYDSSSV DEILSSKINS LLNEDNETWD QMFKLTSEEG  660
FSSEKVKERL VQKLLKEQLH VWLLQKASEG GKGPSILDEG GQGVLHFAAA LGYDWALEPT  720
IVAGVSVNFR DVNGWTALHW AASYGRERTV ASLIHLGAAP GALTDPTPTY PTSRTPADLA  780
SANGHKGISG FLAESALSAH LSSLNLEKQD GKAAECSGTQ ASQTVSGCNA TPVNDADLPS  840
GLPLKDSLAA VCNATQAAAR IHQVFRVQSF QKKQLKEYGD DKLGMSHERA LSLIAVKSQK  900
AGQYDEPVHA AIRIQNKFRG WKGRKEFLII RQRIVKIQAH VRGHQVRKNY RKIIWSVGIL  960
DKIILRWRRK GSGLRGFKSE ALTDGSSMQV VQSKDDDDDF LKEGRRQTEE RSQIALARVK  1020
SMHQHPEARE QYCRLRNVVA EIQEAKAMWE WANNSEVMAE FDELVDLGTS MDDDSFMPSN  1080
S

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription activator that binds to the DNA consensus sequence 5'-[ACG]CGCG[GTC]-3'. Binds calmodulin in a calcium-dependent manner in vitro (PubMed:12218065). Regulates transcriptional activity in response to calcium signals (Probable). Involved in freezing tolerance in association with CAMTA1 and CAMTA2 (PubMed:23581962). Required for the cold-induced expression of DREB1B/CBF1, DREB1C/CBF2, ZAT12 and GOLS3 (PubMed:19270186). Involved in response to cold. Contributes together with CAMTA5 to the positive regulation of the cold-induced expression of DREB1A/CBF3, DREB1B/CBF1 and DREB1C/CBF2 (PubMed:28351986). Involved together with CAMTA2 and CAMTA4 in the positive regulation of a general stress response (GSR) (PubMed:25039701). Involved in the regulation of GSR amplitude downstream of MEKK1 (PubMed:25157030). Involved in the regulation of a set of genes involved in defense responses against pathogens (PubMed:18298954). Involved in the regulation of both basal resistance and systemic acquired resistance (SAR) (PubMed:21900483). Acts as negative regulator of plant immunity (PubMed:19122675, PubMed:21900483, PubMed:22345509, PubMed:28407487). Binds to the promoter of the defense-related gene EDS1 and represses its expression (PubMed:19122675). Binds to the promoter of the defense-related gene NDR1 and represses its expression (PubMed:22345509). Involved in defense against insects (PubMed:23072934, PubMed:22371088). Required for tolerance to the generalist herbivore Trichoplusia ni, and contributes to the positive regulation of genes associated with glucosinolate metabolism (PubMed:23072934). Required for tolerance to Bradysia impatiens larvae. Mediates herbivore-induced wound response (PubMed:22371088). Required for wound-induced jasmonate accumulation (PubMed:23072934, PubMed:22371088). Involved in the regulation of ethylene-induced senescence by binding to the promoter of the senescence-inducer gene EIN3 and repressing its expression (PubMed:22345509). {ECO:0000269\|PubMed:12218065, ECO:0000269\|PubMed:18298954, ECO:0000269\|PubMed:19122675, ECO:0000269\|PubMed:19270186, ECO:0000269\|PubMed:21900483, ECO:0000269\|PubMed:22345509, ECO:0000269\|PubMed:22371088, ECO:0000269\|PubMed:23072934, ECO:0000269\|PubMed:23581962, ECO:0000269\|PubMed:25039701, ECO:0000269\|PubMed:25157030, ECO:0000269\|PubMed:28351986, ECO:0000269\|PubMed:28407487, ECO:0000305\|PubMed:11925432}.

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00042	PBM	Transfer from AT2G22300	Download

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: By heat shock, UVB, salt, wounding, ethylene and methyl jasmonate (PubMed:11162426, PubMed:12218065). Induced by infection with the fungal pathogen Golovinomyces cichoracearum (powdery mildew) and the bacterial pathogen Pseudomonas syringae pv tomato strain DC3000 (PubMed:22345509). {ECO:0000269\|PubMed:11162426, ECO:0000269\|PubMed:12218065, ECO:0000269\|PubMed:22345509}.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_011022796.1	0.0	PREDICTED: calmodulin-binding transcription activator 3-like isoform X1
Refseq	XP_011022797.1	0.0	PREDICTED: calmodulin-binding transcription activator 3-like isoform X1
Refseq	XP_011022798.1	0.0	PREDICTED: calmodulin-binding transcription activator 3-like isoform X1
Swissprot	Q8GSA7	0.0	CMTA3_ARATH; Calmodulin-binding transcription activator 3
TrEMBL	B9HFG2	0.0	B9HFG2_POPTR; Uncharacterized protein
STRING	POPTR_0007s05410.1	0.0	(Populus trichocarpa)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF8284	27	35

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G22300.2	0.0	signal responsive 1

Publications ? help Back to Top
Zhang L,Du L,Shen C,Yang Y,Poovaiah BW Regulation of plant immunity through ubiquitin-mediated modulation of Ca(2+) -calmodulin-AtSR1/CAMTA3 signaling. Plant J., 2014. 78(2): p. 269-81 [PMID:24528504] Benn G, et al. A key general stress response motif is regulated non-uniformly by CAMTA transcription factors. Plant J., 2014. 80(1): p. 82-92 [PMID:25039701] Rahman H,Yang J,Xu YP,Munyampundu JP,Cai XZ Phylogeny of Plant CAMTAs and Role of AtCAMTAs in Nonhost Resistance to Xanthomonas oryzae pv. oryzae. Front Plant Sci, 2016. 7: p. 177 [PMID:26973658] Benn G, et al. Plastidial metabolite MEcPP induces a transcriptionally centered stress-response hub via the transcription factor CAMTA3. Proc. Natl. Acad. Sci. U.S.A., 2016. 113(31): p. 8855-60 [PMID:27432993] Kidokoro S, et al. Different Cold-Signaling Pathways Function in the Responses to Rapid and Gradual Decreases in Temperature. Plant Cell, 2017. 29(4): p. 760-774 [PMID:28351986] Lolle S, et al. Matching NLR Immune Receptors to Autoimmunity in camta3 Mutants Using Antimorphic NLR Alleles. Cell Host Microbe, 2017. 21(4): p. 518-529.e4 [PMID:28407487] Kim YS, et al. CAMTA-Mediated Regulation of Salicylic Acid Immunity Pathway Genes in Arabidopsis Exposed to Low Temperature and Pathogen Infection. Plant Cell, 2017. 29(10): p. 2465-2477 [PMID:28982964] Jacob F, et al. A dominant-interfering camta3 mutation compromises primary transcriptional outputs mediated by both cell surface and intracellular immune receptors in Arabidopsis thaliana. New Phytol., 2018. 217(4): p. 1667-1680 [PMID:29226970]