PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID CCG019894.1
Organism
Populus euphratica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
Family B3
Protein Properties Length: 382aa    MW: 43133.7 Da    PI: 4.9422
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
CCG019894.1genomeLZUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B359.65.3e-1918106197
                  EEEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE CS
           B3   1 ffkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvf 97 
                  f k+l++s+v+   ++ lp +f++ h  +k +++t+ le+esg+++ +++i ++    + l++GWk F+ an+L egD++vF+l++ s+f  +v ++
  CCG019894.1  18 FAKTLVRSNVTVGFWMHLPMRFCKMHL-PK-NDTTVFLENESGEEYILNYIAER----TALSGGWKAFCAANNLHEGDVLVFHLMKPSRF--KVYIV 106
                  89*********************9994.33.5679***************4444....55************************998888..66665 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.108.5E-2312109IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019363.53E-2414108IPR015300DNA-binding pseudobarrel domain
CDDcd100172.67E-2616107No hitNo description
PROSITE profilePS5086314.05718109IPR003340B3 DNA binding domain
PfamPF023623.3E-1718106IPR003340B3 DNA binding domain
SMARTSM010191.9E-1918109IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 382 aa     Download sequence    Send to blast
MELAEEIRAN LEAAYPSFAK TLVRSNVTVG FWMHLPMRFC KMHLPKNDTT VFLENESGEE  60
YILNYIAERT ALSGGWKAFC AANNLHEGDV LVFHLMKPSR FKVYIVKGNG SSQADGEFGI  120
PSSDAYGKEI ISKPDEKDVQ GGKKAKHLEL LPAGHLKENN QENGLIVVDN NKGYAASQSE  180
NESEDRASET LGVIKLSGST VDFDNFEGID NFSILLNGFA IDSELSEHHR IKYYELCRSQ  240
NSFLHSKLLN SINHKLAAEI IIGTVDISEE IRSSRLSSSH ADYGVWDKTL KGFEMFGMNV  300
GFLRERLSRL MNLALESEEA MESECREVKL EQARIDSEMK SLELRLLKLK ETRERLDDEV  360
EALKENAEKH ELMFQEAVSA PW
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011006479.10.0PREDICTED: B3 domain-containing protein Os01g0234100-like isoform X2
TrEMBLA0A3N7G6650.0A0A3N7G665_POPTR; Uncharacterized protein
TrEMBLB9N4X40.0B9N4X4_POPTR; B3 family protein
STRINGPOPTR_0004s14900.10.0(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF10073398
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G19184.14e-30B3 family protein