PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

CCG019648.1

Organism

Populus euphratica

Taxonomic ID

75702

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus

Family

MYB_related

Protein Properties

Length: 784aa MW: 87123.5 Da PI: 7.1485

Description

MYB_related family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
CCG019648.1	genome	LZU	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	26.3	1.8e-08	49	91	3	47
SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 +WT +E+e + a +q G++ +++I ++++ + q++++++ + CCG019648.1 49 AWTRQEEESFFTALRQVGKN-FEKITHHVQ-SKNKDQVRHYYYRL 91 6***************99.*****.*********976 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF46689	1.12E-11	32	96	IPR009057	Homeodomain-like
Gene3D	G3DSA:1.10.10.60	1.9E-5	44	94	IPR009057	Homeodomain-like
PROSITE profile	PS51293	14.564	45	96	IPR017884	SANT domain
SMART	SM00717	9.0E-7	46	94	IPR001005	SANT/Myb domain
Pfam	PF00249	2.3E-6	49	91	IPR001005	SANT/Myb domain
CDD	cd00167	1.85E-6	49	92	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 784 aa Download sequence Send to blast
MEAQVSLDTE RQLLQNGSTQ DGDSGVTSST PDCVETRQPE KRPTRQWAAW TRQEEESFFT 60 ALRQVGKNFE KITHHVQSKN KDQVRHYYYR LVRRMNKLLG PGLCLDAKNS KDTNAAMLRW 120 WSLLEKYSCK ASKLHLKPRR FKIFIEALEN QLLKDQRKNV RKRSSQGENG SPTTPSIITN 180 QNRASVHDTR TVKLVIVDSQ NIQKLGGKGS LKRNVNMGVV RNNNKGDSTA MKPARQRRKP 240 VSSAAYKKWE KAAIAGVSLV ADAAEHLERT ATDKEDEHDQ GKKGLDPVEK LLPHFHPSLR 300 CVESNALTNM KLKLQLFPID DGTRRALEMD KHNPHLELTL STRKKISSVL EHLNRKWGDS 360 TVASGELMLF PYGVNRENLV GYQRWTQDSL VSAADVYFSI GSPPVFRLRY GWFSSVNFAS 420 VTLQAPSTYS CLPVGGNEKE KTMDSVSAAE PSTSDQFEKP ENPCRDCPTS ENNNHASILH 480 SAGVTNNEFV ATGPRNKLVK SFDPAANISL HRKEADDRTN MQQLEDVDGR LSNVNPLSAG 540 EWADSLTNAS IGDLLSELPH VANHNCIEPL IVQSNQCLQE IPFSCDSFDA AIAAHISRHQ 600 GKMGFHSAVA SHTSSIWDGE ETCDAFAFQK NHSLCKEVTT RSAVASPRVS KQMDRTSSIA 660 SSAFLEELPV IEGPHDYPTG GDPMDECSSD SQVVSNQVKD FNGLTDIYWP DSLGLLDLDI 720 QSSKYHTEDL ILSDSLGGLN HLIASSLDAF QNCSFFGLNK KDSISTVEAR ETTSFSDFKI 780 SGGV

Sequence ? help Back to Top

Protein Sequence Length: 784 aa Download sequence Send to blast

MEAQVSLDTE RQLLQNGSTQ DGDSGVTSST PDCVETRQPE KRPTRQWAAW TRQEEESFFT  60
ALRQVGKNFE KITHHVQSKN KDQVRHYYYR LVRRMNKLLG PGLCLDAKNS KDTNAAMLRW  120
WSLLEKYSCK ASKLHLKPRR FKIFIEALEN QLLKDQRKNV RKRSSQGENG SPTTPSIITN  180
QNRASVHDTR TVKLVIVDSQ NIQKLGGKGS LKRNVNMGVV RNNNKGDSTA MKPARQRRKP  240
VSSAAYKKWE KAAIAGVSLV ADAAEHLERT ATDKEDEHDQ GKKGLDPVEK LLPHFHPSLR  300
CVESNALTNM KLKLQLFPID DGTRRALEMD KHNPHLELTL STRKKISSVL EHLNRKWGDS  360
TVASGELMLF PYGVNRENLV GYQRWTQDSL VSAADVYFSI GSPPVFRLRY GWFSSVNFAS  420
VTLQAPSTYS CLPVGGNEKE KTMDSVSAAE PSTSDQFEKP ENPCRDCPTS ENNNHASILH  480
SAGVTNNEFV ATGPRNKLVK SFDPAANISL HRKEADDRTN MQQLEDVDGR LSNVNPLSAG  540
EWADSLTNAS IGDLLSELPH VANHNCIEPL IVQSNQCLQE IPFSCDSFDA AIAAHISRHQ  600
GKMGFHSAVA SHTSSIWDGE ETCDAFAFQK NHSLCKEVTT RSAVASPRVS KQMDRTSSIA  660
SSAFLEELPV IEGPHDYPTG GDPMDECSSD SQVVSNQVKD FNGLTDIYWP DSLGLLDLDI  720
QSSKYHTEDL ILSDSLGGLN HLIASSLDAF QNCSFFGLNK KDSISTVEAR ETTSFSDFKI  780
SGGV

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_011030216.1	0.0	PREDICTED: TSL-kinase interacting protein 1-like
Swissprot	Q8LJT8	0.0	TKI1_ARATH; TSL-kinase interacting protein 1
TrEMBL	A0A2K1XD36	0.0	A0A2K1XD36_POPTR; Uncharacterized protein
STRING	POPTR_0016s09290.1	0.0	(Populus trichocarpa)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF9883	25	31

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G36960.3	0.0	TSL-kinase interacting protein 1