PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

CCG019609.1

Organism

Populus euphratica

Taxonomic ID

75702

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus

Family

WOX

Protein Properties

Length: 298aa MW: 33173 Da PI: 6.1716

Description

WOX family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
CCG019609.1	genome	LZU	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	48.2	1.8e-15	24	84	2	57
T--SS--HHHHHHHHHHHHH.SSS--HHHHHHHHHHC....TS-HHHHHHHHHHHHHHHHC CS Homeobox 2 rkRttftkeqleeLeelFek.nrypsaeereeLAkkl....gLterqVkvWFqNrRakekk 57 r+R+t+++eq+ +Le+ F++ +p ++e ++ k l ++ +++V++WFqNrR + ++ CCG019609.1 24 RSRWTPKPEQILILESIFNSgMVNPPKNETVRIRKLLekfgSVADANVFYWFQNRRSRSRR 84 89***************99***********************************997 PP
2	Wus_type_Homeobox	105.9	2.6e-34	23	86	2	65
Wus_type_Homeobox 2 artRWtPtpeQikiLeelyksGlrtPnkeeiqritaeLeeyGkiedkNVfyWFQNrkaRerqkq 65 +r+RWtP+peQi iLe++++sG+++P+k+e+ ri++ Le++G + d+NVfyWFQNr++R+r++q CCG019609.1 23 VRSRWTPKPEQILILESIFNSGMVNPPKNETVRIRKLLEKFGSVADANVFYWFQNRRSRSRRRQ 86 589***********************************************************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF46689	2.05E-13	19	92	IPR009057	Homeodomain-like
PROSITE profile	PS50071	11.531	20	85	IPR001356	Homeobox domain
SMART	SM00389	4.9E-6	22	89	IPR001356	Homeobox domain
Gene3D	G3DSA:1.10.10.60	6.8E-9	23	90	IPR009057	Homeodomain-like
Pfam	PF00046	3.3E-13	24	84	IPR001356	Homeobox domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 298 aa Download sequence Send to blast
MEDNQGQDHH SPSNHGTERS EPVRSRWTPK PEQILILESI FNSGMVNPPK NETVRIRKLL 60 EKFGSVADAN VFYWFQNRRS RSRRRQRQMQ ASLLAGYQRN NQRAYDSGGV IQYEGGGTSN 120 GFANSPSSYL VGSSSSCGVV DEDHGVESLF SFSNQMGFQE LEQTSGVTSI SSPSETSSLH 180 YQTADLLYLS EKNNGPPLPD SLAVPGFITI FINGVPTEVP RVPLDVKAMF GQDVMLVHSS 240 GVPVPTNEDG FSAQILHHGE SYFLVNISAA NLLSVHFFHP FSFFFFLFTS IVLFFYLN

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor which may be involved in developmental processes. {ECO:0000250}.

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	KF982711	0.0	KF982711.1 Populus tomentosa WOX11/12b (WOX11/12b) mRNA, complete cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_024446658.1	1e-154	WUSCHEL-related homeobox 11
Swissprot	Q6X7J3	5e-62	WOX11_ARATH; WUSCHEL-related homeobox 11
TrEMBL	A0A3N7HC83	1e-153	A0A3N7HC83_POPTR; Uncharacterized protein
STRING	POPTR_0019s05730.1	1e-133	(Populus trichocarpa)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF5898	31	52

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G03660.1	7e-59	WUSCHEL related homeobox 11

Publications ? help Back to Top
Hu X,Xu L Transcription Factors WOX11/12 Directly Activate WOX5/7 to Promote Root Primordia Initiation and Organogenesis. Plant Physiol., 2016. 172(4): p. 2363-2373 [PMID:27784768] Sheng L, et al. Non-canonical WOX11-mediated root branching contributes to plasticity in Arabidopsis root system architecture. Development, 2017. 144(17): p. 3126-3133 [PMID:28743799] Liu J, et al. The WOX11-LBD16 Pathway Promotes Pluripotency Acquisition in Callus Cells During De Novo Shoot Regeneration in Tissue Culture. Plant Cell Physiol., 2018. 59(4): p. 734-743 [PMID:29361138] Baesso B, et al. Transcription factors PRE3 and WOX11 are involved in the formation of new lateral roots from secondary growth taproot in A. thaliana. Plant Biol (Stuttg), 2018. 20(3): p. 426-432 [PMID:29450949]