PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID CCG019520.1
Organism
Populus euphratica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
Family ARF
Protein Properties Length: 618aa    MW: 68405.6 Da    PI: 5.7113
Description ARF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
CCG019520.1genomeLZUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B3794.9e-25126227199
                  EEEE-..-HHHHTT-EE--HHH.HTT.......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE. CS
           B3   1 ffkvltpsdvlksgrlvlpkkfaeeh.......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefe 91 
                  f k+ltpsd+++ g +++p+ +a+++        +++ +  tlt++d +g sW++++iyr++++r++lt+GW++Fv+ ++L +gD+vvF+  ++ ++e
  CCG019520.1 126 FAKILTPSDANNGGGFSVPRFCADSIfpplnyqAEPPVQ--TLTVTDIHGISWDFRHIYRGTPRRHLLTTGWSKFVNNKKLIAGDSVVFM--RNLKGE 219
                  89*********************999****985444444..9************************************************..568999 PP

                  .EEEEE-S CS
           B3  92 lvvkvfrk 99 
                  ++++v+r+
  CCG019520.1 220 MFIGVRRA 227
                  *****996 PP
2Auxin_resp89.75.3e-30271355183
   Auxin_resp   1 aahaastksvFevvYnPrast.seFvvkvekvekalkvkvsvGmRfkmafetedsserrl.sGtvvgvsdldpvrWpnSkWrsLk 83 
                  a++ a+++s+FevvY+Pra++ s+Fvv++e ve+al v +++GmR+kma+etedss+ ++ +Gtv+g+   d+  W++S+Wr+L+
  CCG019520.1 271 AVEMAAKGSPFEVVYYPRAGWySDFVVRAEAVEAALGVFWTAGMRVKMAMETEDSSRMTWfQGTVSGTGLPDSGAWRGSPWRMLQ 355
                  678999*************9779************************************************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.101.0E-33118230IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019362.09E-30120234IPR015300DNA-binding pseudobarrel domain
CDDcd100173.62E-20126226No hitNo description
PfamPF023621.5E-22126227IPR003340B3 DNA binding domain
SMARTSM010199.5E-22126228IPR003340B3 DNA binding domain
PROSITE profilePS5086312.661126228IPR003340B3 DNA binding domain
PfamPF065075.8E-28271355IPR010525Auxin response factor
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009725Biological Processresponse to hormone
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 618 aa     Download sequence    Send to blast
MPQLTELSRV DPRIWRACAG SSVQIPTINS RVYYFPQGHL EQSSSSTAPH PPFLSNLALS  60
KPLISCQISA VDFLADPVTD EVFIRLLLLP LNDHSCNLPH SFLEPSRSEG GGLNDVDDDE  120
NKILAFAKIL TPSDANNGGG FSVPRFCADS IFPPLNYQAE PPVQTLTVTD IHGISWDFRH  180
IYRGTPRRHL LTTGWSKFVN NKKLIAGDSV VFMRNLKGEM FIGVRRAVRL NNSARWREQI  240
AGGGGEGKVK AEEGFSMSGR GRLSQEAVAE AVEMAAKGSP FEVVYYPRAG WYSDFVVRAE  300
AVEAALGVFW TAGMRVKMAM ETEDSSRMTW FQGTVSGTGL PDSGAWRGSP WRMLQALVFF  360
SQFPRFLNFI CVLFPVALML WITWDEPEVL QNAKRVSPWQ VEFVATTPQL QAAFPPMKKL  420
RYPNDSRFLT DGELFFPMSD LTNSTTGHMN ASMLNYSTFP AGMQGARQDP FSTFGLSNFI  480
SENAPQVFRD RAFGNNLVPK MKRMPSEMNI GSLQSENLSP ESQSSAYSFG IGFVGNGGFN  540
PKKVGINSIQ LFGKIIHMDQ PVENGFDDVG FMDDSSKCCN ETEGVDSLEL SLTSSYTELL  600
NRIDAQCQRA SPVEACPT
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4ldu_A9e-621040251388Auxin response factor 5
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtAuxin response factors (ARFs) are transcriptional factors that bind specifically to the DNA sequence 5'-TGTCTC-3' found in the auxin-responsive promoter elements (AuxREs). Could act as transcriptional activator or repressor. Formation of heterodimers with Aux/IAA proteins may alter their ability to modulate early auxin response genes expression. {ECO:0000269|PubMed:12036261}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011006322.10.0PREDICTED: auxin response factor 17-like
SwissprotQ84WU60.0ARFQ_ARATH; Auxin response factor 17
TrEMBLB9H7880.0B9H788_POPTR; Auxin response factor
STRINGPOPTR_0005s16320.10.0(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF40303056
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G77850.11e-178auxin response factor 17
Publications ? help Back to Top
  1. Shi ZH, et al.
    Overexpression of AtTTP affects ARF17 expression and leads to male sterility in Arabidopsis.
    PLoS ONE, 2015. 10(3): p. e0117317
    [PMID:25822980]
  2. de Lucas M, et al.
    Transcriptional Regulation of Arabidopsis Polycomb Repressive Complex 2 Coordinates Cell-Type Proliferation and Differentiation.
    Plant Cell, 2016. 28(10): p. 2616-2631
    [PMID:27650334]
  3. Wójcikowska B,Gaj MD
    Expression profiling of AUXIN RESPONSE FACTOR genes during somatic embryogenesis induction in Arabidopsis.
    Plant Cell Rep., 2017. 36(6): p. 843-858
    [PMID:28255787]
  4. Wang B, et al.
    Fine regulation of ARF17 for anther development and pollen formation.
    BMC Plant Biol., 2017. 17(1): p. 243
    [PMID:29258431]
  5. Wójcik AM,Nodine MD,Gaj MD
    miR160 and miR166/165 Contribute to the LEC2-Mediated Auxin Response Involved in the Somatic Embryogenesis Induction in Arabidopsis.
    Front Plant Sci, 2017. 8: p. 2024
    [PMID:29321785]
  6. Lin JS, et al.
    MicroRNA160 Modulates Plant Development and Heat Shock Protein Gene Expression to Mediate Heat Tolerance in Arabidopsis.
    Front Plant Sci, 2018. 9: p. 68
    [PMID:29449855]