PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID CCG018996.1
Organism
Populus euphratica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
Family ERF
Protein Properties Length: 305aa    MW: 34802.8 Da    PI: 5.9058
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
CCG018996.1genomeLZUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP261.71.6e-19106155255
          AP2   2 gykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55 
                  +y+GVr+++ +grW+AeIrdp+    r  r +lg+++taeeAa  +++a+ +++g
  CCG018996.1 106 RYRGVRQRP-WGRWAAEIRDPY----RrIRLWLGTYDTAEEAAMVYDQAAIRIKG 155
                  8********.**********75....34***********************9988 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000182.14E-31105162No hitNo description
PROSITE profilePS5103223.604106163IPR001471AP2/ERF domain
SMARTSM003804.5E-37106169IPR001471AP2/ERF domain
PfamPF008471.2E-12106155IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.101.2E-29106163IPR001471AP2/ERF domain
SuperFamilySSF541715.36E-21106163IPR016177DNA-binding domain
PRINTSPR003672.6E-10107118IPR001471AP2/ERF domain
PRINTSPR003672.6E-10129145IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0042991Biological Processtranscription factor import into nucleus
GO:0048825Biological Processcotyledon development
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 305 aa     Download sequence    Send to blast
MNRFSTKYTE HKTVTNKLVK WEDSKATRIV RISVTDGNAT DSSGDEKEES KRHHPRVKKH  60
INEIRITSCG SDRAAEDAKK SSKVVSRQQV VKKISRDQCS HPGGKRYRGV RQRPWGRWAA  120
EIRDPYRRIR LWLGTYDTAE EAAMVYDQAA IRIKGPDAQT NFTKPPVSKQ HAPDVDINVN  180
ISGYESGKES HNSLCSPTSV LRFQSTEELG PQSQDAVQSD CCWRIQTQEE VVQEEIIKVG  240
EDNECLVTDP FCLKEFWDFE NPAPIFLEEC SVPDTVLRED YADISVHLDG DFGSCLWDVD  300
KYFEA
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A3e-20104162362ATERF1
3gcc_A3e-20104162362ATERF1
Search in ModeBase
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC2080940.0AC208094.1 Populus trichocarpa clone JGIACSB09-L10, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011023226.10.0PREDICTED: ethylene-responsive transcription factor CRF5-like
TrEMBLA0A3N7G3J30.0A0A3N7G3J3_POPTR; Uncharacterized protein
STRINGPOPTR_0002s16900.10.0(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF45034161
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G46310.12e-48cytokinin response factor 5