PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | CCG018958.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
|
||||||||
Family | ERF | ||||||||
Protein Properties | Length: 177aa MW: 19360.8 Da PI: 6.5093 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 58.3 | 1.9e-18 | 18 | 68 | 1 | 55 |
AP2 1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 + y+GVr ++ +g+Wv+eIr+p++ + r++lg+f +e+Aaka++ a+ +l+g CCG018958.1 18 PVYRGVRKRR-WGKWVSEIREPRK---KSRIWLGSFPVPEMAAKAYDVAAYCLKG 68 68*****887.**********843...6************************998 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF00847 | 2.0E-12 | 18 | 68 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 1.0E-34 | 19 | 82 | IPR001471 | AP2/ERF domain |
Gene3D | G3DSA:3.30.730.10 | 1.9E-30 | 19 | 77 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 1.24E-20 | 19 | 77 | IPR016177 | DNA-binding domain |
PROSITE profile | PS51032 | 23.037 | 19 | 76 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 2.4E-12 | 20 | 31 | IPR001471 | AP2/ERF domain |
CDD | cd00018 | 7.72E-30 | 20 | 77 | No hit | No description |
PRINTS | PR00367 | 2.4E-12 | 58 | 78 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 177 aa Download sequence Send to blast |
MTRLQIPDAT RGSGTRHPVY RGVRKRRWGK WVSEIREPRK KSRIWLGSFP VPEMAAKAYD 60 VAAYCLKGCK AQLNFPEEVD DLPIPSTCTA RDIQAAAAKA AHSVLIPMKK SSETNSGGGS 120 DGEVAGDDFW GEIELPELLL SNSGYSWDSC GWNTTLASDN STWQPDGEGL QPSMACL |
3D Structure ? help Back to Top | ||||||
---|---|---|---|---|---|---|
PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5wx9_A | 1e-19 | 11 | 80 | 6 | 76 | Ethylene-responsive transcription factor ERF096 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
UniProt | Probably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}. |
Binding Motif ? help Back to Top | |||
---|---|---|---|
Motif ID | Method | Source | Motif file |
MP00120 | DAP | Transfer from AT1G01250 | Download |
Annotation -- Nucleotide ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | |||
GenBank | EF148541 | 0.0 | EF148541.1 Populus trichocarpa x Populus deltoides clone WS0133_J24 unknown mRNA. | |||
GenBank | EF155931 | 0.0 | EF155931.1 Populus trichocarpa TINY-like protein (TINYL12) gene, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_011023164.1 | 1e-130 | PREDICTED: ethylene-responsive transcription factor ERF023-like | ||||
Refseq | XP_011023166.1 | 1e-130 | PREDICTED: ethylene-responsive transcription factor ERF023-like | ||||
Refseq | XP_011023167.1 | 1e-130 | PREDICTED: ethylene-responsive transcription factor ERF023-like | ||||
Swissprot | Q1ECI2 | 9e-61 | ERF23_ARATH; Ethylene-responsive transcription factor ERF023 | ||||
TrEMBL | A9PJF3 | 1e-117 | A9PJF3_9ROSI; Uncharacterized protein | ||||
TrEMBL | A9PL82 | 1e-117 | A9PL82_POPTR; TINY-like protein | ||||
STRING | POPTR_0855s00200.1 | 1e-117 | (Populus trichocarpa) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF6375 | 28 | 47 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT1G01250.1 | 4e-62 | ERF family protein |
Publications ? help Back to Top | |||
---|---|---|---|
|