PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID CCG018870.1
Organism
Populus euphratica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
Family Trihelix
Protein Properties Length: 561aa    MW: 64170.3 Da    PI: 6.2425
Description Trihelix family protein
Gene Model
Gene Model ID Type Source Coding Sequence
CCG018870.1genomeLZUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1trihelix90.71.5e-2842125186
     trihelix   1 rWtkqevlaLiearremeerlrrgklkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqle 86 
                  rW+kqe+laL+e+r++m+ ++r++  k+plWeevs+k++e g++rs+k+Ckek+en+ k+++++k ++++r  ++ +t+++f+ql+
  CCG018870.1  42 RWPKQETLALLEIRSDMDVAFRDSVVKAPLWEEVSRKLKELGYNRSAKKCKEKFENIYKYHRRTKGSQSGR--PNGKTYRFFEQLQ 125
                  8********************************************************************97..55568******98 PP
2trihelix104.48.2e-33333418187
     trihelix   1 rWtkqevlaLiearremeerlrrgklkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqlea 87 
                  rW+k+e+  Li++r+++e +++++  k+plWee+s  m+  g+ rs+k+Ckekwen+nk++k++k+++kkr +++s+tcpyf+ql+a
  CCG018870.1 333 RWPKEEIESLIKIRTYLEFQYQENGPKGPLWEEISTSMKNLGYDRSAKRCKEKWENMNKYFKRVKDSNKKR-PGDSKTCPYFQQLDA 418
                  8*********************************************************************8.9************85 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM007170.002239101IPR001005SANT/Myb domain
CDDcd122031.04E-2341106No hitNo description
PfamPF138372.1E-1941127No hitNo description
PROSITE profilePS500907.2134199IPR017877Myb-like domain
PROSITE profilePS500907.538326390IPR017877Myb-like domain
SMARTSM007170.13330392IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.608.7E-4331390IPR009057Homeodomain-like
PfamPF138374.9E-23332419No hitNo description
CDDcd122035.80E-26332397No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 561 aa     Download sequence    Send to blast
MEAPTTFLEN SSAAARDWED EEGDEGMGVQ AEEGVQCSTA NRWPKQETLA LLEIRSDMDV  60
AFRDSVVKAP LWEEVSRKLK ELGYNRSAKK CKEKFENIYK YHRRTKGSQS GRPNGKTYRF  120
FEQLQALDKT NALVSPASSD KDHCLMPLAS VNPVSFIPHD VPCSIQSPSM NCTDATSTST  180
ASTSSEESEG TRKKKRRLTN FFERLMNEVI EKQENLQNKF LEAIEKREQE RIAREEAWKM  240
QEWDKIKREQ ELLDHERAIA AVKDAAVLAF LQKFSEQGIP VQLPDNPTVP MKFPDIQTSP  300
AQLSKNQAVP VENVVKTPEN SSIESFVNMS SSRWPKEEIE SLIKIRTYLE FQYQENGPKG  360
PLWEEISTSM KNLGYDRSAK RCKEKWENMN KYFKRVKDSN KKRPGDSKTC PYFQQLDALY  420
REKTRRVDNP SYELKPEELL MHMMGGQGDQ QLPDSATTED RESENVDQIQ VDYRGKEDGN  480
GYGIVPIDPS SLEIMEPPIL KLGRKMLSTS VPQARHMCVR FLILESSTAA NWCCRGDHGR  540
EKWTLLLKGV CEGQSSDSSK R
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1192196KKKRR
2192197KKKRRL
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor that binds specific DNA sequence. {ECO:0000250}.
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC2113060.0AC211306.1 Populus trichocarpa clone POP004-K18, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011046370.10.0PREDICTED: trihelix transcription factor GT-2-like
SwissprotQ391171e-118TGT2_ARATH; Trihelix transcription factor GT-2
TrEMBLA0A2K1WMS90.0A0A2K1WMS9_POPTR; Uncharacterized protein
STRINGPOPTR_0019s02650.10.0(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF37334181
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G76890.21e-108Trihelix family protein