PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | CCG018589.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
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Family | MYB | ||||||||
Protein Properties | Length: 318aa MW: 35561.8 Da PI: 8.6029 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 55.9 | 9.8e-18 | 14 | 61 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +g+WT+eEde+l++++k +G g+W++ ++ g+ R++k+c++rw +yl CCG018589.1 14 KGAWTKEEDERLINYIKSHGEGCWRSLPKAAGLLRCGKSCRLRWINYL 61 79******************************99************97 PP | |||||||
2 | Myb_DNA-binding | 57.7 | 2.7e-18 | 67 | 111 | 1 | 47 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 rg+++ eEdel+++++ +lG++ W++Ia++++ gRt++++k++w+++ CCG018589.1 67 RGNFSDEEDELIINLHSLLGNK-WSLIAARLP-GRTDNEIKNYWNTH 111 89********************.*********.************97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.10.10.60 | 2.7E-24 | 5 | 64 | IPR009057 | Homeodomain-like |
PROSITE profile | PS51294 | 17.761 | 9 | 61 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 4.23E-29 | 13 | 108 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 6.2E-14 | 13 | 63 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 1.2E-15 | 14 | 61 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 2.14E-11 | 16 | 61 | No hit | No description |
PROSITE profile | PS51294 | 28.565 | 62 | 116 | IPR017930 | Myb domain |
Gene3D | G3DSA:1.10.10.60 | 6.0E-28 | 65 | 116 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 1.3E-17 | 66 | 114 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 1.4E-16 | 67 | 111 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 7.33E-13 | 69 | 112 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 318 aa Download sequence Send to blast |
MGRSPCCEKE HTNKGAWTKE EDERLINYIK SHGEGCWRSL PKAAGLLRCG KSCRLRWINY 60 LRPDLKRGNF SDEEDELIIN LHSLLGNKWS LIAARLPGRT DNEIKNYWNT HIKRKLFSRG 120 IDPQTHRPLN SSTTSSTTST TTNSTNNKNS NMGTKRITNF KLEEQNYSFV QAQPEFMMSN 180 IVKKASDSSI IKVGGSSDSA EDSNSSSGVT AELEVYPNHK LNLELSIGLP CQSQLSSVND 240 LNDSKQANQQ HQEQVVTYQL FGTSATPTSS APAVVHRTAC LCSYNRGFKN SQACSCCNAV 300 EKFVTADSLY RFYRPLDA |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1a5j_A | 9e-29 | 14 | 116 | 7 | 108 | B-MYB |
1h8a_C | 1e-28 | 13 | 116 | 26 | 128 | MYB TRANSFORMING PROTEIN |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor. {ECO:0000305}. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_011001250.1 | 0.0 | PREDICTED: transcription repressor MYB6-like | ||||
Refseq | XP_011015999.1 | 0.0 | PREDICTED: transcription repressor MYB6-like | ||||
Swissprot | P81395 | 2e-90 | MYB30_ANTMA; Myb-related protein 330 | ||||
TrEMBL | B9IP37 | 0.0 | B9IP37_POPTR; Uncharacterized protein | ||||
STRING | POPTR_0019s00750.1 | 0.0 | (Populus trichocarpa) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF264 | 34 | 221 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G16720.1 | 2e-87 | myb domain protein 7 |
Publications ? help Back to Top | |||
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