PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID CCG018577.1
Organism
Populus euphratica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
Family C3H
Protein Properties Length: 386aa    MW: 43861.5 Da    PI: 6.5823
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
CCG018577.1genomeLZUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH277.9e-09929425
                 ---SGGGGTS--TTTTT-SS-S CS
      zf-CCCH  4 elCrffartGtCkyGdrCkFaH 25
                 ++C++fa+ G C++Gd CkF H
  CCG018577.1  9 KPCKYFAQ-GACWRGDHCKFVH 29
                 69******.************* PP
2zf-CCCH24.16.4e-084061426
                 ---SGGGGTS--TTTTT-SS-SS CS
      zf-CCCH  4 elCrffartGtCkyGdrCkFaHg 26
                   C f+++ G C yG+rCk+ H+
  CCG018577.1 40 NVCTFYQK-GNCTYGSRCKYEHV 61
                 57******.***********997 PP
3zf-CCCH26.98.5e-09103126226
                  -S---SGGGGTS--TTTTT-SS-SS CS
      zf-CCCH   2 ktelCrffartGtCkyGdrCkFaHg 26 
                  +++lC+ f   G C++Gd+C+F Hg
  CCG018577.1 103 DRPLCS-FDVAGDCPHGDKCSFVHG 126
                  689***.*****************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003563.5E-5531IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.587532IPR000571Zinc finger, CCCH-type
SuperFamilySSF902292.88E-7830IPR000571Zinc finger, CCCH-type
PfamPF006421.1E-6929IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.102.3E-6933IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.9533663IPR000571Zinc finger, CCCH-type
SMARTSM003561.5E-53762IPR000571Zinc finger, CCCH-type
SuperFamilySSF902298.9E-63860IPR000571Zinc finger, CCCH-type
PfamPF006428.1E-63961IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.101.8E-44160IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010312.718101128IPR000571Zinc finger, CCCH-type
SMARTSM003560.029102127IPR000571Zinc finger, CCCH-type
PfamPF006426.8E-6103126IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.102.6E-4109126IPR000571Zinc finger, CCCH-type
SuperFamilySSF578501.55E-14160230No hitNo description
Gene3DG3DSA:3.30.40.107.2E-12163227IPR013083Zinc finger, RING/FYVE/PHD-type
CDDcd001621.50E-5169226No hitNo description
PfamPF136393.7E-7169224IPR001841Zinc finger, RING-type
PROSITE profilePS5008912.578170224IPR001841Zinc finger, RING-type
SMARTSM001841.7E-8170223IPR001841Zinc finger, RING-type
PROSITE patternPS005180194203IPR017907Zinc finger, RING-type, conserved site
SMARTSM003560.18253281IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010313.103253282IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005515Molecular Functionprotein binding
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 386 aa     Download sequence    Send to blast
MLLLFTLMKP CKYFAQGACW RGDHCKFVHE RKEPLSLSRN VCTFYQKGNC TYGSRCKYEH  60
VKTSWVASGG VAGASSSSSP HQSVILSSVP ASVGSGRDGK KEDRPLCSFD VAGDCPHGDK  120
CSFVHGDLCP TCGKHSLHPF QADEREEHLK SCEKNQKFLV AVKRSEEIEC SVCLDRVLSK  180
PTAAERKFAV LPECNHPFCI SCIRNWRNGS PASGMALRAC PICRKTSHFV IPSLIWYSSK  240
EEKQEIIDTY KARLRQIDCK HFNFGNGNCP FGINCFYKHT VMPGSYTWKH HKPPPRRPPP  300
RHRSNAGHVD SSFDYFGPTM EDLLDMFDDD YLDYDNYCDP FHEEDIFDYE DYFDEERLFP  360
FDMALLLAGM DFGGASDISS DEDDFY
Functional Description ? help Back to Top
Source Description
UniProtE3 ubiquitin ligase catalyzing the covalent attachment of ubiquitin moieties onto substrate proteins. {ECO:0000250}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011005577.10.0PREDICTED: E3 ubiquitin-protein ligase makorin-like
SwissprotQ6IDS61e-110C3H35_ARATH; E3 ubiquitin-protein ligase makorin
TrEMBLA0A2K2AU450.0A0A2K2AU45_POPTR; C3H family protein
STRINGPOPTR_0004s14200.10.0(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF2821133
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G08505.21e-109C3H family protein