PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID CCG018245.1
Organism
Populus euphratica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
Family B3
Protein Properties Length: 372aa    MW: 42038.9 Da    PI: 5.85
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
CCG018245.1genomeLZUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B345.41.5e-14311091197
                  HHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE CS
           B3  11 lksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvf 97 
                  ++++   l kkf++eh    +e++ ++led +g+s + k+    ++++  l++GW++F  +++L egD++vF+l++ ++f  +v v+
  CCG018245.1  31 TNTKKQGLCKKFCDEHLP--NEDTVIVLEDGNGKSSQTKY--LAHKSG--LSGGWRGFSIDHNLVEGDVLVFHLVKPTKF--KVYVV 109
                  444445799*******63..36779***************..555555..9**********************9987777..66555 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5086310.84221112IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.101.3E-1625112IPR015300DNA-binding pseudobarrel domain
SMARTSM010197.3E-1425112IPR003340B3 DNA binding domain
CDDcd100171.74E-1825110No hitNo description
SuperFamilySSF1019363.14E-1829112IPR015300DNA-binding pseudobarrel domain
PfamPF023622.4E-1229108IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 372 aa     Download sequence    Send to blast
MAILKANTQQ AKRGRSSKVK GNEMVLASTQ TNTKKQGLCK KFCDEHLPNE DTVIVLEDGN  60
GKSSQTKYLA HKSGLSGGWR GFSIDHNLVE GDVLVFHLVK PTKFKVYVVK ANSADEVDGA  120
LAFLKFDSCI KQMNPYRAEA EMEYQDLEHL YLTNPEENNT MHGISNIRFI SDHSENESGD  180
FGFEITDGIR MSETVVDFKE VRSFEDFDIL VNGLVINCEL SKHLQMKYYE LCCSQKCFLH  240
ENFIEGLNCK LIAGIISETI NIADAIRASK VSTSYDNFTT WEKTLKAFLG LGMKVDFLLA  300
RLEQLINLSA KSERHKKARL EKDNAEDEMR ILEAKISGVE ETMNRLDVVV ETLGVNAKNI  360
ELRFQELAKA PW
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011017695.10.0PREDICTED: B3 domain-containing protein Os01g0234100-like isoform X1
TrEMBLA0A3N7I6770.0A0A3N7I677_POPTR; Uncharacterized protein
STRINGPOPTR_0018s13750.10.0(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF10073398
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G19184.15e-26B3 family protein