PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID CCG018043.1
Common NameSCL7
Organism
Populus euphratica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
Family GRAS
Protein Properties Length: 588aa    MW: 64886.1 Da    PI: 4.8206
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
CCG018043.1genomeLZUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS356.63.8e-1092235883374
         GRAS   3 elLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfshltaNq 100
                  ++L+ecA+ v+s +  +a + L +l+e +s++gdp +R+ +yf+++L +r+a    el +  +  +t+   s+e + ++k++++++P+ kf+hltaNq
  CCG018043.1 223 KALVECAQLVES-KVDQAVKSLIKLKESVSENGDPGERVGFYFVQGLCRRVAV--GELDDLKNFHQTT---SEEFTLSYKALNDACPYSKFAHLTANQ 314
                  79********99.56677778889****************************8..4444444555554...999************************ PP

         GRAS 101 aIleavegeervHiiDfdisqGlQWpaLlqaLasRpegpp.slRiTgvgspesg..skeeleetgerLakfAeelgvpfefnvlvakrledleleeLr 195
                  aIlea+e+++++Hi+Df+i +G+QW+aLlqaLa+R++g+p ++Ri g+ +p  g   + +l +tg+rL +fA+ l+++fef++ + + +++l+ + +r
  CCG018043.1 315 AILEATEKASKIHIVDFGIVHGVQWAALLQALATRSAGKPvRIRISGIPAPVLGknPAASLLATGNRLLDFAKLLDLNFEFEP-ILTPIQELNESCFR 411
                  ************************************88777*********9988889999***********************.799*********** PP

         GRAS 196 vkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpreseerikvErellgre 293
                  v+p+E+laVn++lql++ll e+    +   + Lk+ ksl+P++v++ e e+++n+  +l+rf +al+yy+a+f+sl+ +++r+s+er  vEr llgr+
  CCG018043.1 412 VEPDEVLAVNFMLQLYNLLGETPGAVE---TALKMAKSLNPRIVTLGEYEVSLNRVGYLTRFKNALRYYTAVFESLDPNMSRDSQERLQVERLLLGRR 506
                  *******************77666666...9******************************************************************* PP

         GRAS 294 ivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvk.sdgyrveeesgslv.lgWkdrpLvsvSaWr 374
                  i+ v+   g  rrer+e +e+Wr  +e++GF++v+ls++a++qak ll +++ s  y++++++  ++ l W++ pL++vS+Wr
  CCG018043.1 507 ISGVLGPDGI-RRERMEDKEQWRVLMESSGFESVSLSHYAMSQAKILLWNYNySTLYSLDDSQPGFLtLAWNEVPLLTVSSWR 588
                  *********9.59***************************************9999****99877777**************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098558.694195566IPR005202Transcription factor GRAS
PfamPF035141.3E-106223588IPR005202Transcription factor GRAS
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
Sequence ? help Back to Top
Protein Sequence    Length: 588 aa     Download sequence    Send to blast
MAYMCADSGN LMAIAQQVIK QKQQQEQQQQ QSHHPQQQFL GLNPFSLNPW PSTTMSANPN  60
LGYGLSGPAA FSDPFQSGPD TGDPPGFSFS NMEHQHSSGF RFPDFTGAGG EFDSDEWMDS  120
LMNGGDSTDS SNLPSGCDAW QNNADFGIYP SDPFNTSPSR LTVGCSPPSD LNRVISNSLW  180
ADPSPQEIKP KTSPPQQPPP TAKNEVVVGS KEVVELSSSP VLKALVECAQ LVESKVDQAV  240
KSLIKLKESV SENGDPGERV GFYFVQGLCR RVAVGELDDL KNFHQTTSEE FTLSYKALND  300
ACPYSKFAHL TANQAILEAT EKASKIHIVD FGIVHGVQWA ALLQALATRS AGKPVRIRIS  360
GIPAPVLGKN PAASLLATGN RLLDFAKLLD LNFEFEPILT PIQELNESCF RVEPDEVLAV  420
NFMLQLYNLL GETPGAVETA LKMAKSLNPR IVTLGEYEVS LNRVGYLTRF KNALRYYTAV  480
FESLDPNMSR DSQERLQVER LLLGRRISGV LGPDGIRRER MEDKEQWRVL MESSGFESVS  540
LSHYAMSQAK ILLWNYNYST LYSLDDSQPG FLTLAWNEVP LLTVSSWR
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5hyz_A1e-1472185881375GRAS family transcription factor containing protein, expressed
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor involved in plant development (By similarity). Involved in environmental abiotic stress resistance. May increase the expression of stress-responsive genes (PubMed:20616154). Binds DNA in vitro (By similarity). {ECO:0000250|UniProtKB:Q53K16, ECO:0000250|UniProtKB:Q9SCR0, ECO:0000269|PubMed:20616154}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Up-regulated by drought and high salt stresses, and down-regulated by gibberellic acid (GA) treatment, but not by plant hormone abscisic acid (ABA) application in leaves. Under the salt treatment, expression is induced quickly, and it peaks at 3 hours. Under the drought treatment, the expression is not induced immediately, but reaches its maximum at 3 hours. Under the GA treatment, the expression becomes weaker within 5 hours. {ECO:0000269|PubMed:20616154}.
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKJ5118630.0KJ511863.1 Populus euphratica GRAS/SCL transcription factor (SCL7) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011015972.10.0PREDICTED: scarecrow-like protein 4
SwissprotA0A024B7I00.0SCL7_POPEU; SCARECROW-LIKE protein 7
TrEMBLB9MXP60.0B9MXP6_POPTR; Uncharacterized protein
STRINGPOPTR_0005s12520.10.0(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF62803449
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G66770.10.0GRAS family protein
Publications ? help Back to Top
  1. Ma HS,Liang D,Shuai P,Xia XL,Yin WL
    The salt- and drought-inducible poplar GRAS protein SCL7 confers salt and drought tolerance in Arabidopsis thaliana.
    J. Exp. Bot., 2010. 61(14): p. 4011-9
    [PMID:20616154]