PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID CCG017779.1
Organism
Populus euphratica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
Family bHLH
Protein Properties Length: 300aa    MW: 31738 Da    PI: 5.9733
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
CCG017779.1genomeLZUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH30.37.7e-10149193554
                  HHHHHHHHHHHHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHH CS
          HLH   5 hnerErrRRdriNsafeeLrellPk.askapskKlsKaeiLekAveYIksL 54 
                  h+++Er RR+ri +++  L+el+P+ +      K + a++L + v+Y+k L
  CCG017779.1 149 HSIAERLRRERIAERIRALQELVPSvN------KTDRAAMLDEIVDYVKFL 193
                  99***********************55......****************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474593.4E-15142203IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088816.12144193IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.108.1E-15146203IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000103.1E-7149193IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003539.5E-11150199IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 300 aa     Download sequence    Send to blast
MANNPTEPPT DDFLQEILGI PNFAPAEAGL VGADAGLAGA ASAQAPMMLQ LSSGDGSGHI  60
SALGGAPGGG GAGFHGFPLG LSLEQGKGGF LKPEEASGSG NRFRDDIVDG RVRNVFHGQP  120
MPTTVTAATH PPAMRPRVRA RRGQATDPHS IAERLRRERI AERIRALQEL VPSVNKTDRA  180
AMLDEIVDYV KFLRLQVKVL SMSRLGGAGA VAPLVTDIPL SPVEDETGEG GRNQLAWEKW  240
SNDGTERQVA KLMEENVGAA MQFLQSKALC IMPISLATAI YHTQPPDTTT IVKPETNPPS
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1153158RLRRER
Functional Description ? help Back to Top
Source Description
UniProtRequired for ovule fertilization. {ECO:0000269|PubMed:15634699}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011026052.10.0PREDICTED: transcription factor UNE12-like
SwissprotO227681e-128UNE12_ARATH; Transcription factor UNE12
TrEMBLB9GS740.0B9GS74_POPTR; BHLH family protein
STRINGPOPTR_0002s04620.10.0(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF54493253
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G02590.21e-101bHLH family protein
Publications ? help Back to Top
  1. Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH
    Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature.
    Differentiation, 2010. 80(1): p. 1-8
    [PMID:20219281]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]