PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | CCG017562.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
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Family | GeBP | ||||||||
Protein Properties | Length: 381aa MW: 42761.6 Da PI: 5.3741 | ||||||||
Description | GeBP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | DUF573 | 118.3 | 4.2e-37 | 161 | 256 | 2 | 98 |
DUF573 2 lfqrlwseeDeivlLqGlidfkaktgkspsddidafyefvkksisfkvsksqlveKirrLKkKfkkkvkkaksgkepsfskehdqkifelskkiWgs 98 lfqrlw+eeDei+lLqG+idf a++g +ps+d++af++f+kks++f+vs +ql +Ki rL+kKf+++vk k+g+++ fsk+hdqk f+lsk iWgs CCG017562.1 161 LFQRLWTEEDEIALLQGIIDFIAEKGYDPSKDMNAFFDFIKKSLHFDVSMTQLKDKISRLRKKFENHVKG-KKGESKIFSKPHDQKGFDLSKYIWGS 256 79******************************************************************99.99**********************95 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF04504 | 1.1E-32 | 162 | 255 | IPR007592 | Protein of unknown function DUF573 |
Sequence ? help Back to Top |
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Protein Sequence Length: 381 aa Download sequence Send to blast |
MAPKRAPPVE DPPSASSSEE EEETSSGEEE ASDDEQSHPS PPQPQTKTIR TQNSAPEKSE 60 PTTQQSESEL ESDSGSESES ESESEPDQSV KPITSKPMEE TPSKEAAAVK KSRSKPAVAA 120 TPEKSTAVKR GNGADRDSKD LKRAKSKESE PEKSEDSKKQ LFQRLWTEED EIALLQGIID 180 FIAEKGYDPS KDMNAFFDFI KKSLHFDVSM TQLKDKISRL RKKFENHVKG KKGESKIFSK 240 PHDQKGFDLS KYIWGSEGTI KANGKKNNNS NDNKRGNAKK LEALRAELGM DVEEEERMEV 300 EMERDSSVKK VLKFDASVSG GKMDDYVVRN GLDFAHGMKK AEMEAKWRKL HIAELELFLK 360 RNELIREQAK LMLSAFKADK D |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | EF145118 | 0.0 | EF145118.1 Populus trichocarpa clone WS01120_J07 unknown mRNA. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_011001958.1 | 0.0 | PREDICTED: mediator-associated protein 1-like | ||||
TrEMBL | B9HMZ5 | 0.0 | B9HMZ5_POPTR; GeBP family protein | ||||
STRING | POPTR_0009s09150.1 | 0.0 | (Populus trichocarpa) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF1831 | 34 | 90 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G25210.1 | 6e-36 | DNA-binding storekeeper protein-related transcriptional regulator |