PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

CCG017443.1

Organism

Populus euphratica

Taxonomic ID

75702

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus

Family

Protein Properties

Length: 278aa MW: 31935.2 Da PI: 9.14

Description

B3 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
CCG017443.1	genome	LZU	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	B3	53	6.2e-17	125	214	1	98
EEEE-..-HHHHTT-EE--HHH.HTT..---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEE CS B3 1 ffkvltpsdvlksgrlvlpkkfaeeh..ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkv 96 f+k +++s+v+ +l lp +f+++h + ++tlede+g + e k+ ++ + l++GW++F+ a++L +gD +vF+l++ ++f +v + CCG017443.1 125 FVKPMLQSHVTGGFWLGLPVPFCKAHlpH----YDEMITLEDENGDESETKY--LAGKTG--LSGGWRGFAIAHDLVDGDALVFQLVSPTKF--KVYI 212 89**********************543....3458***********..555544..*********************9986666..8887 PP E- CS B3 97 fr 98 +r CCG017443.1 213 VR 214 76 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:2.40.330.10	1.7E-20	118	215	IPR015300	DNA-binding pseudobarrel domain
SuperFamily	SSF101936	1.0E-23	119	214	IPR015300	DNA-binding pseudobarrel domain
CDD	cd10017	4.47E-28	123	214	No hit	No description
SMART	SM01019	2.7E-23	125	216	IPR003340	B3 DNA binding domain
PROSITE profile	PS50863	11.857	125	216	IPR003340	B3 DNA binding domain
Pfam	PF02362	3.3E-15	125	214	IPR003340	B3 DNA binding domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 278 aa Download sequence Send to blast
MMQSKQTYEE TRQKRMEENK KRMEELNLTK LSQSLLSKPS PVKKAKPRIS RSPLALTPVR 60 RSNRVAHKLP VSYKEVPIEP LARPRRSYQR RDLLNRVYAS DEVRIYAIHR ADQIQSSLGA 120 DFPSFVKPML QSHVTGGFWL GLPVPFCKAH LPHYDEMITL EDENGDESET KYLAGKTGLS 180 GGWRGFAIAH DLVDGDALVF QLVSPTKFKV YIVRAYDSED NEDQENTKDN EVKDNMEDKE 240 DEGKIEENGK VSDATDLNRR YPKRIRASKY CFSALQNL

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_011000298.1	0.0	PREDICTED: B3 domain-containing protein At3g19184-like
Swissprot	Q1G3M3	3e-87	Y3918_ARATH; B3 domain-containing protein At3g19184
TrEMBL	B9HRZ6	0.0	B9HRZ6_POPTR; Uncharacterized protein
STRING	POPTR_0009s10590.1	0.0	(Populus trichocarpa)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF3336	31	68

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G19184.1	4e-72	B3 family protein

Publications ? help Back to Top
Mantegazza O, et al. Analysis of the arabidopsis REM gene family predicts functions during flower development. Ann. Bot., 2014. 114(7): p. 1507-15 [PMID:25002525]