PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

CCG017442.1

Organism

Populus euphratica

Taxonomic ID

75702

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus

Family

Protein Properties

Length: 289aa MW: 33249.6 Da PI: 8.6687

Description

B3 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
CCG017442.1	genome	LZU	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	B3	47	4.6e-15	125	202	1	84
EEEE-..-HHHHTT-EE--HHH.HTT.---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE CS B3 1 ffkvltpsdvlksgrlvlpkkfaeeh.ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkl 84 f+k +++s+v+ +l lp f+++h ++ ++tlede+g +++ k+ +k++ l++GW++F +++L +gD +vF+l CCG017442.1 125 FLKPMVQSHVSGCFWLGLPVYFCKSHlP---LRDEMMTLEDENGDEFQTKYLAQKTG----LSGGWRGFSIDHELVDGDALVFQL 202 89**********************53...34568***********444444....********************96 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF101936	4.9E-19	120	203	IPR015300	DNA-binding pseudobarrel domain
Gene3D	G3DSA:2.40.330.10	1.0E-16	120	203	IPR015300	DNA-binding pseudobarrel domain
CDD	cd10017	1.94E-23	123	203	No hit	No description
SMART	SM01019	4.3E-15	125	212	IPR003340	B3 DNA binding domain
Pfam	PF02362	1.9E-13	125	203	IPR003340	B3 DNA binding domain
PROSITE profile	PS50863	10.348	125	224	IPR003340	B3 DNA binding domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 289 aa Download sequence Send to blast
MAKSKQTYEE IRQKRMEENK KRMEELNLTK LSQSLLSKPS PVKKGNPRTF RPAAALTPVR 60 RSTRVADRPT VSYKELPVET LERTRRSYSY RRRGFGVYAS SEARASAIDK AEQIQSRLGA 120 DFPSFLKPMV QSHVSGCFWL GLPVYFCKSH LPLRDEMMTL EDENGDEFQT KYLAQKTGLS 180 GGWRGFSIDH ELVDGDALVF QLVYIARAYD SEDNENKADM EEDNEGKENI DNDKNSDSKH 240 LDVIAKRTRA RFLNCYQESF SCLLPFICWH RQKVAFHDAE KQQVSISAI

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_011000309.1	1e-174	PREDICTED: B3 domain-containing protein At3g19184-like
Swissprot	Q1G3M3	1e-73	Y3918_ARATH; B3 domain-containing protein At3g19184
TrEMBL	U5G0R3	1e-166	U5G0R3_POPTR; Uncharacterized protein
STRING	POPTR_0009s10600.1	1e-168	(Populus trichocarpa)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF3336	31	68

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G19184.1	1e-59	B3 family protein

Publications ? help Back to Top
Mantegazza O, et al. Analysis of the arabidopsis REM gene family predicts functions during flower development. Ann. Bot., 2014. 114(7): p. 1507-15 [PMID:25002525]