PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID CCG017441.2
Organism
Populus euphratica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
Family B3
Protein Properties Length: 530aa    MW: 59845.9 Da    PI: 5.6876
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
CCG017441.2genomeLZUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B345.61.2e-141302031798
                  E--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE- CS
           B3  17 vlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvfr 98 
                   +pk+f+e++  + +e+++++lede+g+s+e k+    ++  + l++GW++F  ++++ egD+++F+l++  +f  +v ++r
  CCG017441.2 130 HFPKRFCEAYL-P-KEDTMIVLEDERGKSYETKY--LARK--VGLSAGWRGFSIDHKIMEGDVLIFHLVEPAKF--KVYIVR 203
                  58********5.3.36679***************..4444..45***********************9875555..887776 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.101.1E-1896204IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019361.02E-1998205IPR015300DNA-binding pseudobarrel domain
CDDcd100178.38E-23102203No hitNo description
SMARTSM010192.4E-12104205IPR003340B3 DNA binding domain
PfamPF023624.3E-12130203IPR003340B3 DNA binding domain
PROSITE profilePS5086312.111131205IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 530 aa     Download sequence    Send to blast
MAVLQVNKQK VISPSLSLFS PVLRQLRLLV NCVGFEFTLQ EKRERPPKVN GITKVPSNLS  60
VKSESHTSKR AKIDDLYDNE EVKSDVMMRA KEIQSNLSPE LPSIIKHMLP SNVTRVFWLC  120
SEWPTFGWKH FPKRFCEAYL PKEDTMIVLE DERGKSYETK YLARKVGLSA GWRGFSIDHK  180
IMEGDVLIFH LVEPAKFKVY IVRVNDSEEV DGALALLKLE AGVKQMGPEE VDGALGLLKL  240
EAAIKQMTPS KFQNSAPALA HLSIRNDRAL CDLTYLRYLV NEAVLVEKLS KVSGEMEDLD  300
FKHLSHDNLE KNNEKNVKLA CPTTFGPISD PYEYESEDLG SETTDGIRLS NSAVDFKEVK  360
CFEDFDILVN GLVINSELSK HLQTKYYELC CSQNSFLHDH LLDGLNCKLV VGMLSETIHI  420
ADAITASKLT ASLESFAIWE KTLKAFEGLG MNVGFLLARL GQLMHLSAKS KRYEEATLQR  480
VNAKEEMTTL EAKLLEVKDT INRLGVEIEK LVVDSENLEL KFQEVAEAPW
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011000335.10.0PREDICTED: B3 domain-containing protein Os01g0234100-like isoform X3
TrEMBLA0A2K1Z5S40.0A0A2K1Z5S4_POPTR; Uncharacterized protein
STRINGPOPTR_0009s10610.10.0(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF10073398
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G19184.16e-32B3 family protein