PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID CCG017440.1
Organism
Populus euphratica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
Family B3
Protein Properties Length: 476aa    MW: 54228.3 Da    PI: 5.8305
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
CCG017440.1genomeLZUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B358.98.7e-19112200197
                  EEEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE CS
           B3   1 ffkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvf 97 
                  f k+l++s+v+   ++ lp +f++ h  +k +++t+ le+esg+++ +++i ++    + l++GWk F+ an+L egD++vF+l++ s+f  +v ++
  CCG017440.1 112 FAKTLVRSNVTVGFWMHLPMRFCKMHL-PK-NDTTVFLENESGEEYILNYIAER----TALSGGWKAFCAANNLHEGDVLVFHLVKPSRF--KVYIV 200
                  89*********************9994.33.5679***************4444....55************************998888..66665 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.101.1E-22106203IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019363.92E-24108202IPR015300DNA-binding pseudobarrel domain
CDDcd100171.95E-26110201No hitNo description
PfamPF023625.5E-17112200IPR003340B3 DNA binding domain
PROSITE profilePS5086314.043112203IPR003340B3 DNA binding domain
SMARTSM010193.1E-20112203IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 476 aa     Download sequence    Send to blast
MDAEEDQSTS PKPQLPISNP VPLNTYPRIR RRKPNMSKIK LTQIHEKSPE PEYKTGHEIV  60
LYDKSGESRE PRSRKRKKDA FSVFYDSTET KSPAMELAEE IRTNLEAAYP SFAKTLVRSN  120
VTVGFWMHLP MRFCKMHLPK NDTTVFLENE SGEEYILNYI AERTALSGGW KAFCAANNLH  180
EGDVLVFHLV KPSRFKVYIV KGNGSSQGDG EFGIPSSGAY GKEIISEPAE KDVKSSKKAE  240
PLKLLPVGHQ EENNQENGLI AVENNKGNVA DQSENESEDR ASETLRVIKL SGPTVDFNNV  300
KGIENFKILL NGFAIDSELS EHHRIKYYEL CRSQNSFLHS KLLNSINHKL AAEIIIGTVD  360
ISEEIRSSRL SSSHADYGVW DKTLKGFEMF GMNVGFLRER LSRLMNLALE SEEAMESECR  420
EVRLEQARVD EEMKSLELRL LKLKETRERL DDEMEILKEN AEKHELMFQE AVNAPW
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
17377RKRKK
27378RKRKKD
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankCU2295031e-89CU229503.1 Populus EST from mild drought-stressed leaves.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011000251.10.0PREDICTED: B3 domain-containing protein Os01g0234100-like isoform X1
TrEMBLB9HRZ40.0B9HRZ4_POPTR; Uncharacterized protein
STRINGPOPTR_0009s10620.10.0(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF10073398
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G19184.13e-32B3 family protein