PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

CCG017276.1

Organism

Populus euphratica

Taxonomic ID

75702

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus

Family

SRS

Protein Properties

Length: 206aa MW: 23003.1 Da PI: 8.9014

Description

SRS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
CCG017276.1	genome	LZU	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF702	179.2	1.8e-55	11	142	4	154
DUF702 4 gtasCqdCGnqakkdCaheRCRtCCksrgfdCathvkstWvpaakrrerqqqlaaasskaaasaaeaaskrkrelkskkqsalsstklssaeskkele 101 g+++CqdCGnqakkdC ++RCRtCCks+gf+C+thvkstWvpa++rr+r q l+ +++ + + +++kr re ++++ le CCG017276.1 11 GGSRCQDCGNQAKKDCFYMRCRTCCKSKGFQCQTHVKSTWVPAYRRRQRAQDLSPVQQQY--QLQGHNPKRLRE-----------------NPSSGLE 89 6789*******************************************88877764333..233333444433.................3455788 PP DUF702 102 tsslPeevsseavfrcvrvssvddgeeelaYqtavsigGhvfkGiLydqGlee 154 ++++P+ev+s+a frc rvss+d++ +++aYqt v+igGhvfkGiLydqG+e+ CCG017276.1 90 IENFPAEVNSTATFRCFRVSSIDEAVDQVAYQTRVNIGGHVFKGILYDQGPEN 142 999**********************************************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF05142	1.1E-57	12	141	IPR007818	Protein of unknown function DUF702
TIGRFAMs	TIGR01623	4.1E-28	15	56	IPR006510	Zinc finger, lateral root primordium type 1
TIGRFAMs	TIGR01624	5.3E-24	93	140	IPR006511	Lateral Root Primordium type 1, C-terminal

Sequence ? help Back to Top
Protein Sequence Length: 206 aa Download sequence Send to blast
MMMMRPAGCL GGSRCQDCGN QAKKDCFYMR CRTCCKSKGF QCQTHVKSTW VPAYRRRQRA 60 QDLSPVQQQY QLQGHNPKRL RENPSSGLEI ENFPAEVNST ATFRCFRVSS IDEAVDQVAY 120 QTRVNIGGHV FKGILYDQGP ENRYDFGESS CRQLQGPNLT NAGALTPATT TLASTTGAAE 180 CLARPSFPFP LNAFMSDKQL FLHPKS

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription activator that binds DNA on 5'-ACTCTAC-3' and promotes auxin homeostasis-regulating gene expression (e.g. YUC genes), as well as genes affecting stamen development, cell expansion and timing of flowering. Synergistically with other SHI-related proteins, regulates gynoecium, stamen and leaf development in a dose-dependent manner, controlling apical-basal patterning. Promotes style and stigma formation, and influences vascular development during gynoecium development. May also have a role in the formation and/or maintenance of the shoot apical meristem (SAM). Suppressor of the gibberellin (GA) signal transduction. {ECO:0000269\|PubMed:10368174, ECO:0000269\|PubMed:11706176, ECO:0000269\|PubMed:16740146}.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_011047676.1	1e-155	PREDICTED: protein SHI RELATED SEQUENCE 1
Refseq	XP_011047685.1	1e-155	PREDICTED: protein SHI RELATED SEQUENCE 1
Swissprot	Q9XGX0	1e-60	SHI_ARATH; Protein SHORT INTERNODES
TrEMBL	A0A3N7FNC2	1e-149	A0A3N7FNC2_POPTR; Uncharacterized protein
STRING	POPTR_0009s12450.1	1e-144	(Populus trichocarpa)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF9969	25	41

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G66350.1	3e-59	Lateral root primordium (LRP) protein-related

Publications ? help Back to Top
Islam MA, et al. Overexpression of the AtSHI gene in poinsettia, Euphorbia pulcherrima, results in compact plants. PLoS ONE, 2013. 8(1): p. e53377 [PMID:23308204] Pfannebecker KC,Lange M,Rupp O,Becker A An Evolutionary Framework for Carpel Developmental Control Genes. Mol. Biol. Evol., 2017. 34(2): p. 330-348 [PMID:28049761] Estornell LH,Landberg K,Cierlik I,Sundberg E SHI/STY Genes Affect Pre- and Post-meiotic Anther Processes in Auxin Sensing Domains in Arabidopsis. Front Plant Sci, 2018. 9: p. 150 [PMID:29491878]