PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | CCG017212.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
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Family | C3H | ||||||||
Protein Properties | Length: 341aa MW: 38148.7 Da PI: 7.9344 | ||||||||
Description | C3H family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-CCCH | 29.3 | 1.5e-09 | 80 | 105 | 1 | 27 |
--S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 1 yktelCrffartGtCkyGdrCkFaHgp 27 +kt+ C f GtC+ G++C+FaHg+ CCG017212.1 80 FKTRVCAKFKT-GTCRNGENCNFAHGM 105 69*******99.*************95 PP | |||||||
2 | zf-CCCH | 29.7 | 1.1e-09 | 144 | 167 | 2 | 25 |
-S---SGGGGTS--TTTTT-SS-S CS zf-CCCH 2 ktelCrffartGtCkyGdrCkFaH 25 k++lC+ f+ + +C+yGdrC+F H CCG017212.1 144 KMKLCKKFYNGEECPYGDRCNFLH 167 789*******66************ PP | |||||||
3 | zf-CCCH | 41.4 | 2.3e-13 | 229 | 254 | 1 | 26 |
--S---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 1 yktelCrffartGtCkyGdrCkFaHg 26 +kt+lC + tG+C++G++C+FaHg CCG017212.1 229 WKTKLCTKWEITGQCPFGEKCHFAHG 254 8************************9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:4.10.1000.10 | 1.3E-14 | 75 | 112 | IPR000571 | Zinc finger, CCCH-type |
SuperFamily | SSF90229 | 3.27E-8 | 77 | 110 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 2.7E-6 | 79 | 105 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 15.253 | 79 | 106 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF00642 | 2.9E-7 | 80 | 105 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 5.0E-4 | 142 | 169 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 14.333 | 142 | 170 | IPR000571 | Zinc finger, CCCH-type |
SuperFamily | SSF90229 | 1.57E-7 | 142 | 169 | IPR000571 | Zinc finger, CCCH-type |
Gene3D | G3DSA:4.10.1000.10 | 1.1E-9 | 144 | 168 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF00642 | 3.1E-7 | 144 | 167 | IPR000571 | Zinc finger, CCCH-type |
Gene3D | G3DSA:4.10.1000.10 | 2.9E-16 | 224 | 260 | IPR000571 | Zinc finger, CCCH-type |
SuperFamily | SSF90229 | 2.49E-10 | 227 | 259 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 2.7E-7 | 228 | 255 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 15.544 | 228 | 256 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF00642 | 9.8E-11 | 229 | 254 | IPR000571 | Zinc finger, CCCH-type |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 341 aa Download sequence Send to blast |
MSYPDSHDSF MSLQASYQAG SDAIGVWPQF VMNNNEQFEH HQPPYKRPRN SEDNSNQSMN 60 SRTPPTNNLP VHKGTTNIFF KTRVCAKFKT GTCRNGENCN FAHGMQDLRQ PPPNWKELVG 120 VSVISEEDRS TATNWEDDQR IIHKMKLCKK FYNGEECPYG DRCNFLHEDP SKFREDTGRF 180 RESSAISIGT TGQALGHGSG VFNAAEVNRP ANNAVSDASR SNIIKPVYWK TKLCTKWEIT 240 GQCPFGEKCH FAHGLAELQA PGGRTEVEAG NAGSVLTKAP PPLLPNNVSP SVTVNVPSLI 300 EEEQGKKCLL KWKGQKKINR IYADWLDDLP LVHNLTNQVQ S |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_011046665.1 | 0.0 | PREDICTED: zinc finger CCCH domain-containing protein 39-like isoform X1 | ||||
Swissprot | Q9LT81 | 3e-99 | C3H39_ARATH; Zinc finger CCCH domain-containing protein 39 | ||||
TrEMBL | A0A2K1Z781 | 0.0 | A0A2K1Z781_POPTR; Uncharacterized protein | ||||
STRING | POPTR_0009s13310.1 | 0.0 | (Populus trichocarpa) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF8333 | 33 | 45 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G19360.1 | 1e-90 | C3H family protein |