PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

CCG017185.1

Organism

Populus euphratica

Taxonomic ID

75702

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus

Family

MYB

Protein Properties

Length: 271aa MW: 30172.3 Da PI: 8.3528

Description

MYB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
CCG017185.1	genome	LZU	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	53.6	5.1e-17	14	61	1	48
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +g+WT+eEd++lv +++ +G g+W++ ++ g+ R++k+c++rw +yl CCG017185.1 14 KGAWTKEEDDRLVAYIRAHGEGCWRSLPKAAGLLRCGKSCRLRWINYL 61 79****************************99**********97 PP
2	Myb_DNA-binding	56	8.9e-18	67	111	1	47
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 rg++T+ Edel+++++ +lG++ W++Ia +++ gRt++++k++w+++ CCG017185.1 67 RGNFTEAEDELIIKLHSLLGNK-WSLIAGRLP-GRTDNEIKNYWNTH 111 89******************.*****.**********97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.10.10.60	1.1E-23	5	64	IPR009057	Homeodomain-like
PROSITE profile	PS51294	16.558	9	61	IPR017930	Myb domain
SuperFamily	SSF46689	3.74E-29	13	108	IPR009057	Homeodomain-like
SMART	SM00717	3.2E-13	13	63	IPR001005	SANT/Myb domain
Pfam	PF00249	5.8E-15	14	61	IPR001005	SANT/Myb domain
CDD	cd00167	8.29E-10	16	61	No hit	No description
PROSITE profile	PS51294	28.409	62	116	IPR017930	Myb domain
Gene3D	G3DSA:1.10.10.60	2.2E-27	65	116	IPR009057	Homeodomain-like
SMART	SM00717	7.6E-17	66	114	IPR001005	SANT/Myb domain
Pfam	PF00249	5.1E-16	67	111	IPR001005	SANT/Myb domain
CDD	cd00167	8.84E-12	69	112	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 271 aa Download sequence Send to blast
MGRSPCCEKA HTNKGAWTKE EDDRLVAYIR AHGEGCWRSL PKAAGLLRCG KSCRLRWINY 60 LRPDLKRGNF TEAEDELIIK LHSLLGNKWS LIAGRLPGRT DNEIKNYWNT HIRRKLLNRG 120 IDPATHRPLN EPAAQEAATT ISFTKTTTSV LEEESLGSII KEENKEKIIS ATAFVCKEEE 180 TQVQERCPDL NLELGISLPS QNQPDHHQPF KTGGSRSLCF ACSLGLQNSK DCSCTVIVST 240 VGSSGSTSTK TGYDFLGMKS GVLDYRSLEM K

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1h8a_C	6e-29	13	116	26	128	MYB TRANSFORMING PROTEIN
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Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor. {ECO:0000305}.

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	FJ807470	0.0	FJ807470.1 Populus trichocarpa MYB transcription factor (MYB156) mRNA, complete cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_011046315.1	0.0	PREDICTED: myb-related protein 308-like
Swissprot	P81393	1e-122	MYB08_ANTMA; Myb-related protein 308
TrEMBL	B9HR69	0.0	B9HR69_POPTR; MYB family protein
STRING	POPTR_0009s13640.1	0.0	(Populus trichocarpa)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF264	34	221

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G38620.1	1e-107	myb domain protein 4

Publications ? help Back to Top
Jackson D,Culianez-Macia F,Prescott AG,Roberts K,Martin C Expression patterns of myb genes from Antirrhinum flowers. Plant Cell, 1991. 3(2): p. 115-25 [PMID:1840903]