PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | CCG017054.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
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Family | C3H | ||||||||
Protein Properties | Length: 181aa MW: 21330.2 Da PI: 11.431 | ||||||||
Description | C3H family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-CCCH | 20.7 | 7.4e-07 | 11 | 34 | 2 | 25 |
-S---SGGGGTS--TTTTT-SS-S CS zf-CCCH 2 ktelCrffartGtCkyGdrCkFaH 25 ++++C+f++++ C++ drC++ H CCG017054.1 11 DRVNCPFYFKSLACRHVDRCSRLH 34 6899******************** PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50103 | 9.263 | 9 | 37 | IPR000571 | Zinc finger, CCCH-type |
PRINTS | PR01848 | 7.8E-15 | 15 | 34 | IPR009145 | U2 auxiliary factor small subunit |
PRINTS | PR01848 | 7.8E-15 | 34 | 54 | IPR009145 | U2 auxiliary factor small subunit |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0000398 | Biological Process | mRNA splicing, via spliceosome | ||||
GO:0089701 | Cellular Component | U2AF | ||||
GO:0003723 | Molecular Function | RNA binding | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 181 aa Download sequence Send to blast |
MAASIFGTEK DRVNCPFYFK SLACRHVDRC SRLHTKPSIS RTLLLSNMYR RRDMITPAVD 60 ALGNTIDPRK IQQYFETSVK LPVGNMRRTY VIVVGIARKR NGSHEECSHG GRGSSRRYDD 120 REEYHESRSR RHKSINPGHW RGQRRRKRSP VRERSEERQA KIAQWNQVRE QHENAANKVK 180 R |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
4yh8_A | 6e-15 | 3 | 77 | 6 | 75 | Splicing factor U2AF 23 kDa subunit |
Search in ModeBase |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
TrEMBL | A0A3L6QYH7 | 3e-38 | A0A3L6QYH7_PANMI; Uncharacterized protein | ||||
STRING | POPTR_0009s15180.1 | 7e-47 | (Populus trichocarpa) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G44785.1 | 1e-22 | C3H family protein |