PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

CCG016991.4

Organism

Populus euphratica

Taxonomic ID

75702

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus

Family

FAR1

Protein Properties

Length: 902aa MW: 101022 Da PI: 6.549

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
CCG016991.4	genome	LZU	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	54.4	4e-17	62	133	2	88
FAR1 2 fYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHe 88 fY+eYA+++GFs+++++ ++ k++g i r+fvC +eg ++++ ++ C+a+l+++++ +gkw+vt+++++HnH+ CCG016991.4 62 FYDEYARRLGFSTKVAHFTRPKTDGAIAAREFVCGREGLKRRSADS--------------CHAMLRIELK-RGKWVVTHFVKDHNHS 133 9************************************9998877..............******.*************8 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03101	6.7E-14	62	134	IPR004330	FAR1 DNA binding domain
Pfam	PF10551	2.1E-23	303	388	IPR018289	MULE transposase domain
PROSITE profile	PS50966	11.165	574	610	IPR007527	Zinc finger, SWIM-type
Pfam	PF04434	4.6E-10	580	608	IPR007527	Zinc finger, SWIM-type
SMART	SM00575	5.8E-8	585	612	IPR006564	Zinc finger, PMZ-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0009506	Cellular Component	plasmodesma
GO:0008270	Molecular Function	zinc ion binding

Sequence ? help Back to Top
Protein Sequence Length: 902 aa Download sequence Send to blast
MDVHVIDDEE GTSHRGVAYN GDAEPNDSGE ANNGEHDEDG AAELHEPCVG MEFDSENAAK 60 TFYDEYARRL GFSTKVAHFT RPKTDGAIAA REFVCGREGL KRRSADSCHA MLRIELKRGK 120 WVVTHFVKDH NHSTVNPSKV HYLRPRRHFA GAAKSAAKTG QGVGVSPSGD GQAAAVATSG 180 FSQGGGIVPS GVMYLSMDGN RTLVSETNHG VRNTTPAEPN RVVKTSTLVN YTARSSNQKR 240 TLGRDAQNLL EYFKKMQAEN PGFFYAIQLD DENRMANVFW ADAKSRTAYT HFGDAVTFET 300 SPRVNQYRVP FAPFTGLNHH GQTILFGCAI LLDDSEASFV WLFKTFLTAM YDQQPASLIT 360 NQDKAIQTAV SQVFPDTRHC ISKWHVLREG QEKLAHVCNA HPNFQLELYN CINLTETIEE 420 FENSWIDILD KYDLRGHDWL QSLYDARAQW VPVYFRDSFF AVMCPNQGFD GTFFDGYVNQ 480 QTTLPMFFRQ YERALDNWFE RELEADFDTI CTTPVLRTPS PMEKQAANLY TRKIFAKFQE 540 ELVETFVYTA NRIEGDSAIS TFRVAKFEDD QRAYMVSLNY PEMRANCSCQ MFEYSGILCR 600 HVLTVFTVTN VLTLPPHYIL KRWTRNAKTG AGTDDRGVDL PGQESLTLRY NNLCREAIKY 660 AEEGAIAVET YNAAMGALRE GGKKVAVVKK NVAKVSPPGS QGGGTGNDDW KTSTSASDTT 720 PFLWPLQDEA TRRFNLNDTG TPVQSVADLN LPRMAPVSLQ RDDGPPGNMA VLPCLKSMTW 780 VMENRSSTTG NRVAVINLKL QDYGKTPSTE LEVKFQLSRV TLEPMLRSMA YISEQLSTPA 840 NRVAVINLKL QDTETTTGES EVKFQVSRDT LGAMLRSMAY IREQLSISVE PQAEPPSKKH 900 RK

Sequence ? help Back to Top

Protein Sequence Length: 902 aa Download sequence Send to blast

MDVHVIDDEE GTSHRGVAYN GDAEPNDSGE ANNGEHDEDG AAELHEPCVG MEFDSENAAK  60
TFYDEYARRL GFSTKVAHFT RPKTDGAIAA REFVCGREGL KRRSADSCHA MLRIELKRGK  120
WVVTHFVKDH NHSTVNPSKV HYLRPRRHFA GAAKSAAKTG QGVGVSPSGD GQAAAVATSG  180
FSQGGGIVPS GVMYLSMDGN RTLVSETNHG VRNTTPAEPN RVVKTSTLVN YTARSSNQKR  240
TLGRDAQNLL EYFKKMQAEN PGFFYAIQLD DENRMANVFW ADAKSRTAYT HFGDAVTFET  300
SPRVNQYRVP FAPFTGLNHH GQTILFGCAI LLDDSEASFV WLFKTFLTAM YDQQPASLIT  360
NQDKAIQTAV SQVFPDTRHC ISKWHVLREG QEKLAHVCNA HPNFQLELYN CINLTETIEE  420
FENSWIDILD KYDLRGHDWL QSLYDARAQW VPVYFRDSFF AVMCPNQGFD GTFFDGYVNQ  480
QTTLPMFFRQ YERALDNWFE RELEADFDTI CTTPVLRTPS PMEKQAANLY TRKIFAKFQE  540
ELVETFVYTA NRIEGDSAIS TFRVAKFEDD QRAYMVSLNY PEMRANCSCQ MFEYSGILCR  600
HVLTVFTVTN VLTLPPHYIL KRWTRNAKTG AGTDDRGVDL PGQESLTLRY NNLCREAIKY  660
AEEGAIAVET YNAAMGALRE GGKKVAVVKK NVAKVSPPGS QGGGTGNDDW KTSTSASDTT  720
PFLWPLQDEA TRRFNLNDTG TPVQSVADLN LPRMAPVSLQ RDDGPPGNMA VLPCLKSMTW  780
VMENRSSTTG NRVAVINLKL QDYGKTPSTE LEVKFQLSRV TLEPMLRSMA YISEQLSTPA  840
NRVAVINLKL QDTETTTGES EVKFQVSRDT LGAMLRSMAY IREQLSISVE PQAEPPSKKH  900
RK

Functional Description ? help Back to Top
Source	Description
UniProt	Putative transcription activator involved in regulating light control of development.

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Up-regulated in hypocotyls by far-red light treatment. {ECO:0000269\|PubMed:15591448}.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_011043590.1	0.0	PREDICTED: protein FAR1-RELATED SEQUENCE 3-like
Refseq	XP_011043599.1	0.0	PREDICTED: protein FAR1-RELATED SEQUENCE 3-like
Swissprot	Q9ZVC9	0.0	FRS3_ARATH; Protein FAR1-RELATED SEQUENCE 3
TrEMBL	A0A2K1Z8K8	0.0	A0A2K1Z8K8_POPTR; Uncharacterized protein
STRING	POPTR_0009s16010.1	0.0	(Populus trichocarpa)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF40	30	530

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G27110.2	0.0	FAR1-related sequence 3

Publications ? help Back to Top
Joly-Lopez Z, et al. Abiotic Stress Phenotypes Are Associated with Conserved Genes Derived from Transposable Elements. Front Plant Sci, 2017. 8: p. 2027 [PMID:29250089]