PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID CCG016613.1
Organism
Populus euphratica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
Family NAC
Protein Properties Length: 556aa    MW: 62162.2 Da    PI: 4.3659
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
CCG016613.1genomeLZUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM170.17e-53101371128
          NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLp.k.kvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlskk 96 
                  l+pGfrFhPtdeelv +yLk+kv++k++++ ++i+ +diyk+ePwdLp k k+k+++ ewyfFs  dkky +g+++nrat++gyWk+tgkd++v + +
  CCG016613.1  10 LAPGFRFHPTDEELVRYYLKRKVTNKPFRF-DAISVTDIYKSEPWDLPdKsKLKSRDLEWYFFSMLDKKYGNGSKTNRATEKGYWKTTGKDRPVRQ-N 105
                  579**************************9.99**************95347777888*************************************9.9 PP

          NAM  97 gelvglkktLvfykgrapkgektdWvmheyrl 128
                  +++vg+kktLv+++grap+g++++Wvmheyrl
  CCG016613.1 106 SQVVGMKKTLVYHQGRAPRGQRSNWVMHEYRL 137
                  9*****************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019413.53E-618160IPR003441NAC domain
PROSITE profilePS510055810160IPR003441NAC domain
PfamPF023654.1E-2812137IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009644Biological Processresponse to high light intensity
GO:0009962Biological Processregulation of flavonoid biosynthetic process
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0005737Cellular Componentcytoplasm
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 556 aa     Download sequence    Send to blast
MGRSDSATSL APGFRFHPTD EELVRYYLKR KVTNKPFRFD AISVTDIYKS EPWDLPDKSK  60
LKSRDLEWYF FSMLDKKYGN GSKTNRATEK GYWKTTGKDR PVRQNSQVVG MKKTLVYHQG  120
RAPRGQRSNW VMHEYRLVDE ELEKAGITQD AFVLCRIFQK SGTGPKNGEQ YGAPFIEEEW  180
EDDEVPLLPS EEMVLTEEAP VGDDAYLEMN ELGQNFDTGI ASENTALPQN FYYGEASNYV  240
EQPRNFSEDD LKPMLRGAEN RHGPSLPAEE NLDLPGQYET DAVKNEYNAE PMNNVNAVDV  300
NYLFDESYLD ALNNLPQSEG LFLEANDLSN PVEPETGGDS SGFDMLEEYL NFFDADDENM  360
SFDPSDIFAS DIAVSNQQPP PQEDVKGGTE EVLKAIQKPL ETHGNVDPSS SKQKPDAMEF  420
DSGFKYPFIK QASHMLGKIP APPALASEFP SKDAALRIQS ASSSSIHVTA GMIRIENMSL  480
GGNGAEWSFG KNGNIDVIFS FGLPQQEGGP ASWVPMTSLF SGKAESVVSR GWLFLMFFWV  540
LILSVSYKIG TCICAK
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ut4_A2e-45916616171NO APICAL MERISTEM PROTEIN
1ut4_B2e-45916616171NO APICAL MERISTEM PROTEIN
1ut7_A2e-45916616171NO APICAL MERISTEM PROTEIN
1ut7_B2e-45916616171NO APICAL MERISTEM PROTEIN
4dul_A2e-45916616171NAC domain-containing protein 19
4dul_B2e-45916616171NAC domain-containing protein 19
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator activated by proteolytic cleavage through regulated intramembrane proteolysis (RIP) (By similarity). Transcripition activator associated with the induction of genes related to flavonoid biosynthesis and required for the accumulation of anthocyanins in response to high light stress (PubMed:19887540). Plays a role in the regulation of 20S and 26S proteasomes in response to high light stress (PubMed:21889048). {ECO:0000250|UniProtKB:Q949N0, ECO:0000269|PubMed:19887540, ECO:0000269|PubMed:21889048}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00059PBMTransfer from AT5G04410Download
Motif logo
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By exposure to high light (PubMed:19887540). Induced by heat and methyl methanesulfonate (MMS) treatment (PubMed:17158162). {ECO:0000269|PubMed:17158162, ECO:0000269|PubMed:19887540}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011031618.10.0PREDICTED: NAC domain-containing protein 78-like isoform X1
SwissprotQ84K001e-180NAC78_ARATH; NAC domain-containing protein 78
TrEMBLA0A2K1ZAW70.0A0A2K1ZAW7_POPTR; Uncharacterized protein
STRINGPOPTR_0008s03170.10.0(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF53473247
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G04410.10.0NAC domain containing protein 2
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  3. Liang M, et al.
    Subcellular Distribution of NTL Transcription Factors in Arabidopsis thaliana.
    Traffic, 2015. 16(10): p. 1062-74
    [PMID:26201836]
  4. Xiao D, et al.
    SENESCENCE-SUPPRESSED PROTEIN PHOSPHATASE Directly Interacts with the Cytoplasmic Domain of SENESCENCE-ASSOCIATED RECEPTOR-LIKE KINASE and Negatively Regulates Leaf Senescence in Arabidopsis.
    Plant Physiol., 2015. 169(2): p. 1275-91
    [PMID:26304848]
  5. Gladman NP,Marshall RS,Lee KH,Vierstra RD
    The Proteasome Stress Regulon Is Controlled by a Pair of NAC Transcription Factors in Arabidopsis.
    Plant Cell, 2016. 28(6): p. 1279-96
    [PMID:27194708]
  6. Tang Y,Zhao CY,Tan ST,Xue HW
    Arabidopsis Type II Phosphatidylinositol 4-Kinase PI4Kγ5 Regulates Auxin Biosynthesis and Leaf Margin Development through Interacting with Membrane-Bound Transcription Factor ANAC078.
    PLoS Genet., 2016. 12(8): p. e1006252
    [PMID:27529511]