PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | CCG016537.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
|
||||||||
Family | Trihelix | ||||||||
Protein Properties | Length: 384aa MW: 44101.1 Da PI: 6.2528 | ||||||||
Description | Trihelix family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | trihelix | 86.7 | 2.8e-27 | 75 | 156 | 2 | 86 |
trihelix 2 WtkqevlaLiearremeerlrrgklkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqle 86 W ++e++ Li +rrem+ ++++k++k+lWe++s+kmre+gf rsp++C++kw+nl k++kk k+++++ s +++y+++++ CCG016537.1 75 WVQDETRSLIGLRREMDGLFNTSKSNKHLWEQISAKMREKGFDRSPTMCTDKWRNLLKEFKKAKHQDRGS---GSAKMSYYKEID 156 ********************************************************************84...556899***997 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50090 | 8.455 | 67 | 131 | IPR017877 | Myb-like domain |
Gene3D | G3DSA:1.10.10.60 | 4.2E-4 | 67 | 133 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 0.0022 | 71 | 133 | IPR001005 | SANT/Myb domain |
CDD | cd12203 | 3.76E-29 | 73 | 138 | No hit | No description |
Pfam | PF13837 | 1.3E-21 | 74 | 158 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0042802 | Molecular Function | identical protein binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 384 aa Download sequence Send to blast |
MYSSDKPRPL DFYKEEETPS SRDNMIIEVV SSNGDLPPHH LPTTTNTNPH QMILGDSSGD 60 DNHEVKAPKK RAETWVQDET RSLIGLRREM DGLFNTSKSN KHLWEQISAK MREKGFDRSP 120 TMCTDKWRNL LKEFKKAKHQ DRGSGSAKMS YYKEIDEILR ERNKNPQYKS PIPSKVDSYM 180 QFADKGFEDT SISFGPVEAS PRPTLNLERR LDHDGHPLAI TAADAVAASG VPPWNWRETP 240 GNGAENQSYG GRVISVKYGD YTRRIGVDGT ADAIKEAIKS AFRLRSKRAF WLEDEDQIIR 300 SLDRDMPPGN YTLHLDEGLA IKVCLYDESD HIPVHTEEKI FYTEDDYRDF LSRRGWTCLR 360 EFDGYRNIDS MDDLRHDAIY RGVS |
3D Structure ? help Back to Top | ||||||
---|---|---|---|---|---|---|
PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
2jmw_A | 4e-51 | 69 | 154 | 1 | 86 | DNA binding protein GT-1 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
UniProt | Probable transcription factor that binds specifically to the core DNA sequence 5'-GGTTAA-3'. May act as a molecular switch in response to light signals. {ECO:0000269|PubMed:10437822, ECO:0000269|PubMed:15044016, ECO:0000269|PubMed:7866025}. |
Binding Motif ? help Back to Top | |||
---|---|---|---|
Motif ID | Method | Source | Motif file |
MP00004 | PBM | Transfer from 920224 | Download |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_011015851.1 | 0.0 | PREDICTED: trihelix transcription factor GT-1-like | ||||
Refseq | XP_011042307.1 | 0.0 | PREDICTED: trihelix transcription factor GT-1-like | ||||
Swissprot | Q9FX53 | 0.0 | TGT1_ARATH; Trihelix transcription factor GT-1 | ||||
TrEMBL | B9HTC3 | 0.0 | B9HTC3_POPTR; Uncharacterized protein | ||||
STRING | POPTR_0008s17980.1 | 0.0 | (Populus trichocarpa) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF6817 | 32 | 48 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT1G13450.1 | 0.0 | Trihelix family protein |
Publications ? help Back to Top | |||
---|---|---|---|
|