PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

CCG016347.1

Organism

Populus euphratica

Taxonomic ID

75702

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus

Family

Trihelix

Protein Properties

Length: 279aa MW: 33523.2 Da PI: 9.7824

Description

Trihelix family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
CCG016347.1	genome	LZU	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	trihelix	77.7	1.7e-24	39	121	1	86
trihelix 1 rWtkqevlaLiearremeerlrrgklkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqle 86 +W+ qe+++ + +r e++ ++ ++k++k lWe +s+km+e+g++rs++qCk+kw+nl +ryk ++++e + ++++p++++l+ CCG016347.1 39 QWSIQETKEFLMIRAELDPTFMEKKRNKVLWEVISNKMKEKGYNRSAEQCKCKWKNLFTRYKGCETIEPEA---MRQQFPFYNELQ 121 7******************************************************************95...56689***98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00717	0.0073	36	98	IPR001005	SANT/Myb domain
CDD	cd12203	4.93E-23	38	103	No hit	No description
Pfam	PF13837	1.6E-20	39	123	No hit	No description
PROSITE profile	PS50090	7.329	40	96	IPR017877	Myb-like domain

Sequence ? help Back to Top
Protein Sequence Length: 279 aa Download sequence Send to blast
MEGHLHHQHH NQHHLQQYQL LQQQHHISVN VEASDKFPQW SIQETKEFLM IRAELDPTFM 60 EKKRNKVLWE VISNKMKEKG YNRSAEQCKC KWKNLFTRYK GCETIEPEAM RQQFPFYNEL 120 QAIFTSRMQR MLRAEAEGAA TGLKKKAVKL SSDDEDKNEE IIEGEKGGSR KKIKKGKAIG 180 GTSSSGYSIS LKESLEDFTK QQMQMEMQWR EVFEARENER RMKEMEWRQT MKQLENDRIV 240 MERRWREREE QRRVREEARA EKRDALITAL LNKLRREDM

Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor that binds specifically to the core DNA sequence 5'-GTTAC-3'. {ECO:0000269\|PubMed:15044016}.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_011004762.1	0.0	PREDICTED: trihelix transcription factor GT-3b-like
Refseq	XP_011004763.1	0.0	PREDICTED: trihelix transcription factor GT-3b-like
Swissprot	Q9SDW0	2e-69	TGT3A_ARATH; Trihelix transcription factor GT-3a
TrEMBL	B9IGA4	0.0	B9IGA4_POPTR; Uncharacterized protein
STRING	POPTR_0016s12470.1	0.0	(Populus trichocarpa)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF1781	33	85

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G01380.1	2e-55	Trihelix family protein